WormBase Tree Display for Gene: WBGene00016058

WBGene00016058 SMap: S_parent: Sequence: C24D10
  Identity: Version: 2
    Name: CGC_name: nspd-3 Person_evidence: WBPerson1983
      Sequence_name: C24D10.7
      Molecular_name: C24D10.7
        C24D10.7.1
        CE16879
      Other_name: CELE_C24D10.7 Accession_evidence: NDB BX284604
      Public_name: nspd-3
    DB_info: Database: AceView gene 4F928
        WormQTL gene WBGene00016058
        WormFlux gene WBGene00016058
        NDB locus_tag CELE_C24D10.7
        Panther gene CAEEL|WormBase=WBGene00016058|UniProtKB=G5EG23
          family PTHR35375
        NCBI gene 259569
        RefSeq protein NM_068329.5
        TREEFAM TREEFAM_ID TF319437
        TrEMBL UniProtAcc G5EG23
        UniProt_GCRP UniProtAcc G5EG23
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 03 Oct 2006 09:54:23 WBPerson2970 Name_change: CGC_name: nspd-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    Allele: WBVar01499754
      WBVar01499395
      WBVar01499396
      WBVar01894107
      WBVar01894108
      WBVar01499242
      WBVar01499633
      WBVar01500245
    RNASeq_FPKM (74)
    Ortholog (85)
    Paralog: WBGene00010633 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012781 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017808 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017386 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022754 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021280 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020860 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020715 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00043147 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including amphid sheath cell; intestine; muscle cell; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-seven chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C24D10.7
    Corresponding_transcript: C24D10.7.1
    Other_sequence: CRC01200_1
      CR01622
    Associated_feature: WBsf230063
  Experimental_info: RNAi_result: WBRNAi00041089 Inferred_automatically: RNAi_primary
      WBRNAi00011109 Inferred_automatically: RNAi_primary
      WBRNAi00011108 Inferred_automatically: RNAi_primary
      WBRNAi00041090 Inferred_automatically: RNAi_primary
      WBRNAi00022616 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017312
      Expr1145125
      Expr2014480
      Expr2032719
    Drives_construct: WBCnstr00028355
    Construct_product: WBCnstr00028355
    Microarray_results (22)
    Expression_cluster: WBPaper00027339:daf-12(rh273)_upregulated
      WBPaper00029047:atx-3_upregulated
      WBPaper00031070:rrf-3_eri-1_upregulated
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00033070:Elbe_upregulated
      WBPaper00034636:heat_shock_downregulated
      WBPaper00038237:age-1_upregulated_intestine_rescue
      WBPaper00038237:age-1_upregulated_neuron_rescue
      WBPaper00038237:age-1_upregulated_nontransgenic
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00041071:spe-44_downregulated
      WBPaper00041954:ethanol_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00043945:MeHg_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:rising_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00044857:BAR-1_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045521:Spermatogenic
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00045809:rsd-2(yp10)_downregulated
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00046805:P-granule-RNAi_upregulated_Set1
      WBPaper00046805:P-granule-RNAi_upregulated_Set2
      WBPaper00046887:WNT-target
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049417:B.animalis_upregulated
      WBPaper00049489:AMsh-glia_enriched
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00050053:muscle_enriched_Day12
      WBPaper00050231:male_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051265:F1_morc-1(tm6048)_upregulated
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053368:F.oxysporum_regulated
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00056586:kri-1(ok1251)_upregulated
      WBPaper00056731:human-amylin_downregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
      WBPaper00057347:nhr-14(tm1473)_upreglated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058948:PA14_upregulated
      WBPaper00059175:hlh-17p-XBP-1_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_adult
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00060224:atf-6(ok551)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
      WBPaper00060921:cat-2(e1112)_downregulated
      WBPaper00060921:tbh-1(ok1196)_downregulated
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061045:Y56A3A.22(cck200)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:ASG_AWA
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061478:pie-1(ne4433)_upregulated
      WBPaper00061479:hda-1(ne4747)_upregulated
      WBPaper00061479:hda-1(ne4748)_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:prg-1(tm872)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:nspd-1-nspd-2
      WBPaper00061572:oleic-acid-specific_mating_upregulated
      WBPaper00061636:atracurium_downregulated
      WBPaper00061651:Sperm_enriched
      WBPaper00061853:osm-3(dh441)_downregulated
      WBPaper00061853:osm-3(dh441)_downregulated_tunicamycin
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065841:3_3
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      cgc4386_cluster_1_1
      cgc4489_group_11
      WBPaper00025099:MA_specific
      WBPaper00026980:intestine_enriched
      WBPaper00029437:rde-4_upregulated
      WBPaper00031184:acrylamide_upregulated
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00033101:spr-5_regulated
      WBPaper00034661:AgNPs_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00035873:osmotically_regulated
      WBPaper00036286:Pattern_E
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037113:CPF_16C_down-regulated
      WBPaper00037113:DZN_16C_down-regulated
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040963:Q50_up
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045374:Benzene_upregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00046639:tyrosol_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00051387:Triclosan_downregulated
      [cgc6390]:Cluster_D
      [cgc6390]:spermatogenesis-enriched
    Interaction: WBInteraction000100911
      WBInteraction000100963
      WBInteraction000101021
      WBInteraction000101277
      WBInteraction000101434
      WBInteraction000101472
      WBInteraction000101497
      WBInteraction000101681
      WBInteraction000101688
      WBInteraction000101693
      WBInteraction000101700
      WBInteraction000101965
      WBInteraction000102227
      WBInteraction000102277
      WBInteraction000102382
      WBInteraction000102438
      WBInteraction000102641
      WBInteraction000102781
      WBInteraction000103640
      WBInteraction000103743
      WBInteraction000103872
      WBInteraction000103955
      WBInteraction000105237
      WBInteraction000105336
      WBInteraction000105473
      WBInteraction000105486
      WBInteraction000105931
      WBInteraction000106138
      WBInteraction000106164
      WBInteraction000108883
      WBInteraction000108895
      WBInteraction000109094
      WBInteraction000109183
      WBInteraction000109893
      WBInteraction000109910
      WBInteraction000110220
      WBInteraction000110323
      WBInteraction000110909
      WBInteraction000111196
      WBInteraction000111922
      WBInteraction000112287
      WBInteraction000113512
      WBInteraction000114948
      WBInteraction000115057
      WBInteraction000115270
      WBInteraction000115284
      WBInteraction000117512
      WBInteraction000119730
      WBInteraction000120498
      WBInteraction000121023
      WBInteraction000124292
      WBInteraction000124428
      WBInteraction000124450
      WBInteraction000124782
      WBInteraction000125622
      WBInteraction000127352
      WBInteraction000133111
      WBInteraction000133220
      WBInteraction000138139
      WBInteraction000138643
      WBInteraction000139259
      WBInteraction000139301
      WBInteraction000140445
      WBInteraction000140558
      WBInteraction000141621
      WBInteraction000141695
      WBInteraction000141700
      WBInteraction000142535
      WBInteraction000142692
      WBInteraction000143271
      WBInteraction000143408
      WBInteraction000144438
      WBInteraction000145575
      WBInteraction000148117
      WBInteraction000149034
      WBInteraction000149423
      WBInteraction000150051
      WBInteraction000150543
      WBInteraction000150629
      WBInteraction000151118
      WBInteraction000152208
      WBInteraction000160221
      WBInteraction000161172
      WBInteraction000163414
      WBInteraction000163944
      WBInteraction000164090
      WBInteraction000165128
      WBInteraction000168242
      WBInteraction000168586
      WBInteraction000171953
      WBInteraction000175456
      WBInteraction000175630
      WBInteraction000176642
      WBInteraction000180055
      WBInteraction000182424
      WBInteraction000185086
      WBInteraction000185474
      WBInteraction000189121
      WBInteraction000191087
      WBInteraction000192001
      WBInteraction000194034
      WBInteraction000194951
      WBInteraction000197854
      WBInteraction000197954
      WBInteraction000198567
      WBInteraction000198857
      WBInteraction000200675
      WBInteraction000202529
      WBInteraction000210632
      WBInteraction000211673
      WBInteraction000212113
      WBInteraction000212706
      WBInteraction000213391
      WBInteraction000213498
      WBInteraction000216073
      WBInteraction000219919
      WBInteraction000219998
      WBInteraction000220261
      WBInteraction000224866
      WBInteraction000226914
      WBInteraction000228175
      WBInteraction000229218
      WBInteraction000232810
      WBInteraction000234502
      WBInteraction000236380
      WBInteraction000237153
      WBInteraction000242039
      WBInteraction000242081
      WBInteraction000242190
      WBInteraction000246147
      WBInteraction000246973
      WBInteraction000249782
      WBInteraction000250626
      WBInteraction000257904
      WBInteraction000262228
      WBInteraction000267753
      WBInteraction000270588
      WBInteraction000271466
      WBInteraction000273231
      WBInteraction000273239
      WBInteraction000276426
      WBInteraction000278060
      WBInteraction000279023
      WBInteraction000280525
      WBInteraction000280962
      WBInteraction000282082
      WBInteraction000287961
      WBInteraction000289145
      WBInteraction000290435
      WBInteraction000290665
      WBInteraction000291061
      WBInteraction000292654
      WBInteraction000293160
      WBInteraction000294898
      WBInteraction000297053
      WBInteraction000297345
      WBInteraction000307578
      WBInteraction000312238
      WBInteraction000312957
      WBInteraction000313433
      WBInteraction000317647
      WBInteraction000319064
      WBInteraction000321489
      WBInteraction000321688
      WBInteraction000324835
      WBInteraction000326220
      WBInteraction000327276
      WBInteraction000330991
      WBInteraction000334481
      WBInteraction000335218
      WBInteraction000337791
      WBInteraction000342214
      WBInteraction000346939
      WBInteraction000347246
      WBInteraction000350792
      WBInteraction000352123
      WBInteraction000352781
      WBInteraction000353129
      WBInteraction000354267
      WBInteraction000360651
      WBInteraction000361050
      WBInteraction000361903
      WBInteraction000364677
      WBInteraction000365634
      WBInteraction000366976
      WBInteraction000370327
      WBInteraction000370940
      WBInteraction000371988
      WBInteraction000375203
      WBInteraction000378533
      WBInteraction000384965
      WBInteraction000390221
      WBInteraction000400665
      WBInteraction000404520
      WBInteraction000405539
      WBInteraction000405572
      WBInteraction000405657
      WBInteraction000411816
      WBInteraction000411984
      WBInteraction000418133
      WBInteraction000418787
      WBInteraction000418951
      WBInteraction000422240
      WBInteraction000423622
      WBInteraction000430957
      WBInteraction000433581
      WBInteraction000442273
      WBInteraction000446586
      WBInteraction000449596
      WBInteraction000462716
      WBInteraction000503086
  Map_info: Map: IV Position: 1.53533
    Positive: Positive_clone: C24D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene