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WormBase Tree Display for Gene: WBGene00000395

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Name Class

WBGene00000395SMapS_parentSequenceZK112
IdentityVersion1
NameCGC_namecdh-3Person_evidenceWBPerson698
Sequence_nameZK112.7
Molecular_nameZK112.7
ZK112.7.1
CE50490
Other_nameCELE_ZK112.7Accession_evidenceNDBBX284603
Public_namecdh-3
DB_infoDatabaseAceViewgene3I832
WormQTLgeneWBGene00000395
WormFluxgeneWBGene00000395
NDBlocus_tagCELE_ZK112.7
PanthergeneCAEEL|WormBase=WBGene00000395|UniProtKB=P34616
familyPTHR24028
NCBIgene176085
RefSeqproteinNM_066286.6
SwissProtUniProtAccP34616
UniProt_GCRPUniProtAccP34616
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdh
AlleleWBVar00239228Inferred_automaticallyFrom strain object: NL1000
WBVar00239220Inferred_automaticallyFrom strain object: NL721
WBVar01645518
WBVar01645520
WBVar01645521
WBVar01500260
WBVar02053399
WBVar02053400
WBVar01331117
WBVar02018970
WBVar00269869
WBVar01408907
WBVar01408908
WBVar00233791
WBVar00233792
WBVar00840776
WBVar00840777
WBVar00840778
WBVar00840779
WBVar00564068
WBVar00840780
WBVar00840781
WBVar00840782
WBVar00840783
WBVar00840784
WBVar00840785
WBVar00840786
WBVar00061294
WBVar00840787
WBVar00840788
WBVar00840789
WBVar00840790
WBVar00840791
WBVar00840792
WBVar00840793
WBVar00061304
WBVar00840794
WBVar00840795
WBVar00061309
WBVar00840796
WBVar00065760
WBVar00840797
WBVar00840798
WBVar01499774
WBVar01446829
WBVar01446830
WBVar00061314
WBVar00840799
WBVar01446831
WBVar00840800
WBVar00840801
WBVar01446834
WBVar00061319
WBVar00840802
WBVar01446835
WBVar00840803
WBVar01446838
WBVar01446842
WBVar00840804
WBVar00061324
WBVar00840805
WBVar00840806
WBVar00840807
WBVar00061329
WBVar00840808
WBVar00840809
WBVar00840810
WBVar00840811
WBVar02132307
WBVar00061334
WBVar00840812
WBVar02132308
WBVar00840813
WBVar00840814
WBVar00840815
WBVar00840816
WBVar00840817
WBVar00061344
WBVar00840818
WBVar00840819
WBVar00840820
WBVar00061349
WBVar00840821
WBVar01265790
WBVar00840822
WBVar00061354
WBVar00840823
WBVar00840824
WBVar00066333
WBVar00840825
WBVar00061359
WBVar00840826
WBVar00840827
WBVar00840828
WBVar00254231
WBVar00840829
WBVar00061364
WBVar00402085
WBVar00840830
WBVar00402086
WBVar00840831
WBVar00402087
WBVar00840832
WBVar00402088
WBVar00402089
WBVar00840833
WBVar00402090
WBVar00840834
WBVar00840835
WBVar00066348
WBVar00402091
WBVar00840836
WBVar00402092
WBVar00840837
WBVar00402093
WBVar00840838
WBVar00402094
WBVar00602707
WBVar00402095
WBVar00840839
WBVar00402096
WBVar00840840
WBVar00402097
WBVar00840841
WBVar00840842
WBVar00402098
WBVar00840843
WBVar00402099
WBVar00840844
WBVar00402100
WBVar00402101
WBVar00840845
WBVar00402102
WBVar00840846
WBVar00840847
WBVar00402103
WBVar00402104
WBVar00840848
WBVar00840849
WBVar00402105
WBVar00402106
WBVar00840850
WBVar00402107
WBVar00840851
WBVar00402108
WBVar00840852
WBVar00402109
WBVar00840853
WBVar00402110
WBVar00840854
WBVar00254440
WBVar00840855
WBVar00840856
WBVar00840857
WBVar00840858
WBVar00236654
WBVar00236655
WBVar01497453
WBVar01491566
WBVar01497657
WBVar01397024
WBVar01995545
WBVar01397025
WBVar01838085
WBVar01489020
WBVar01838086
WBVar01838087
WBVar01838088
WBVar01838089
WBVar01838090
WBVar01838091
Legacy_information[Pettitt J, Wood WB] Encodes a cadherin-related protein. 10kb transcript detected on Northern blots, in late-stage embryo and L1 larval RNA. lac-Z driven by a 5 kb promoter fragment results in lac-Z expression in seam cells in comma-stage through to 3-fold embryos. A few other as yet unidentified hypodermal cells also stain in the anterior.
StrainWBStrain00026516
WBStrain00030884
WBStrain00030896
WBStrain00030900
WBStrain00040717
WBStrain00028923
WBStrain00028943
RNASeq_FPKM (74)
GO_annotation (22)
Ortholog (23)
ParalogWBGene00019994Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000396Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000402Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000399Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000401Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022103Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncdh-3 encodes a member of the cadherin superfamily that affects morphogenesis of tail epithelia and excretory function; expressed predominantly in developing epithelial cells, and also expressed in the AC, excretory cell, various neurons, and vulval cells during different stages of development.Paper_evidenceWBPaper00002636
WBPaper00011717
WBPaper00017629
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable structural molecule activity. Involved in basement membrane disassembly and nematode male tail tip morphogenesis. Located in basement membrane; cytoplasm; and plasma membrane. Expressed in several structures, including HSN; VC neuron; anchor cell; epithelial cell; and ventral nerve cord.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK112.7
Corresponding_CDS_historyZK112.7:wp246
Corresponding_transcriptZK112.7.1
Other_sequenceTcir_isotig12995
Associated_featureWBsf667100
WBsf667101
WBsf993126
WBsf993127
WBsf993128
WBsf993129
WBsf1015302
WBsf1015303
WBsf1015304
WBsf227018
Experimental_infoRNAi_resultWBRNAi00021816Inferred_automaticallyRNAi_primary
WBRNAi00059125Inferred_automaticallyRNAi_primary
WBRNAi00107682Inferred_automaticallyRNAi_primary
WBRNAi00005441Inferred_automaticallyRNAi_primary
Expr_pattern (16)
Drives_construct (63)
Construct_productWBCnstr00001679
WBCnstr00006510
WBCnstr00006511
WBCnstr00015725
WBCnstr00015726
WBCnstr00015727
WBCnstr00015730
WBCnstr00037572
Microarray_resultsSMD_ZK112.7
179837_s_at
A_12_P104161
Aff_ZK112.7
GPL13394_WBGene00000395
GPL13914_ZK112.7
GPL14144_ZK112.7_6416-6475_0.810_109_C
GPL14144_ZK112.7_9760-9819_0.938_2_B
GPL14144_ZK112.7_9892-9951_0.935_3_A
GPL19516_CGZ0056251
GPL21109_ZK112.7
GPL3518_CE00378
GPL8304_CE_WBGene00000395_A
GPL8673_ZK112_7P08776
GPL8673_ZK112_7P09252
GPL8673_ZK112_7P09796
GPL9450_ZK112.7
cea2.p.81673
Expression_cluster (176)
Interaction (48)
Map_infoMapIIIPosition-0.618657Error0.003852
PositivePositive_cloneZK112Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4191
5266
Pseudo_map_position
Reference (66)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene