WormBase Tree Display for Gene: WBGene00021876

WBGene00021876 SMap: S_parent: Sequence: Y54G2A
  Identity: Version: 1
    Name: Sequence_name: Y54G2A.11
      Molecular_name: Y54G2A.11a
        Y54G2A.11a.1
        CE27483
        Y54G2A.11b
        CE33884
        Y54G2A.11b.1
        Y54G2A.11b.2
        Y54G2A.11b.3
      Other_name: CELE_Y54G2A.11 Accession_evidence: NDB BX284604
      Public_name: Y54G2A.11
    DB_info: Database: AceView gene 4D532
        WormQTL gene WBGene00021876
        WormFlux gene WBGene00021876
        NDB locus_tag CELE_Y54G2A.11
        NCBI gene 177058
        RefSeq protein NM_001028317.6
            NM_001392270.1
        TREEFAM TREEFAM_ID TF350389
        TrEMBL UniProtAcc Q86FN8
            Q95XX8
        UniProt_GCRP UniProtAcc Q95XX8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar00094460 Inferred_automatically: From strain object: RB2500
      WBVar00894678
      WBVar00894679
      WBVar00894680
      WBVar00894681
      WBVar00894682
      WBVar00894683
      WBVar00894684
      WBVar00894685
      WBVar00894686
      WBVar00894687
      WBVar00894688
      WBVar00894689
      WBVar00894690
      WBVar00320486
      WBVar01580479
      WBVar01513608
      WBVar01513609
      WBVar01513610
      WBVar01513611
      WBVar01513612
      WBVar01513613
      WBVar01513614
      WBVar01513615
      WBVar01513616
      WBVar01513617
      WBVar01513618
      WBVar02041921
      WBVar02041922
      WBVar01896513
      WBVar02041923
      WBVar02041924
      WBVar01965490
      WBVar01710223
      WBVar02082212
      WBVar02110184
      WBVar01953621
      WBVar02110185
      WBVar00570506
      WBVar01568552
      WBVar01568553
      WBVar01568554
      WBVar01498316
      WBVar01568555
      WBVar01568556
      WBVar01568557
      WBVar01568558
      WBVar00318639
      WBVar02020167
      WBVar00186387
      WBVar00186388
      WBVar00186389
      WBVar00186390
      WBVar00186391
      WBVar01702883
      WBVar01794581
      WBVar01499633
      WBVar01451440
      WBVar01451441
      WBVar01451442
      WBVar00419956
      WBVar00419957
      WBVar00322340
      WBVar00419958
      WBVar00419959
      WBVar00419960
      WBVar00419961
      WBVar00419962
      WBVar00419963
      WBVar01922210
      WBVar00419964
      WBVar01922211
      WBVar01922212
      WBVar00419965
      WBVar00419966
      WBVar00419967
      WBVar00419968
      WBVar00419969
      WBVar00419970
      WBVar00419971
      WBVar00419972
      WBVar00419973
      WBVar02112288
      WBVar01990633
      WBVar01825756
      WBVar02133495
      WBVar00894659
      WBVar00894660
      WBVar00894661
      WBVar00894662
      WBVar00894663
      WBVar00894664
      WBVar00894665
      WBVar00894666
      WBVar00894667
      WBVar00894668
      WBVar00894669
      WBVar00894670
      WBVar00894671
      WBVar00894672
      WBVar01803669
      WBVar00894673
      WBVar01803670
      WBVar01803671
      WBVar00894674
      WBVar01803672
      WBVar00894675
      WBVar00894676
      WBVar01803673
      WBVar00894677
    Strain: WBStrain00033175
    RNASeq_FPKM (74)
    GO_annotation: 00089417
    Ortholog (18)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54G2A.11a
      Y54G2A.11b
    Corresponding_transcript: Y54G2A.11a.1
      Y54G2A.11b.1
      Y54G2A.11b.2
      Y54G2A.11b.3
    Other_sequence (19)
    Associated_feature: WBsf655500
      WBsf995773
      WBsf229833
      WBsf229834
      WBsf229835
  Experimental_info: RNAi_result: WBRNAi00057438 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram793
      Expr1013473
      Expr1039607
      Expr1160874
      Expr2007932
      Expr2026174
    Drives_construct: WBCnstr00024420
    Construct_product: WBCnstr00024420
    Microarray_results (27)
    Expression_cluster: WBPaper00029359_1141
      WBPaper00029359_1280
      WBPaper00029359_1304
      WBPaper00029359_1444
      WBPaper00029359_1497
      WBPaper00029359_1504
      WBPaper00029359_1604
      WBPaper00030922:glycosylated_protein
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00034761:hlh-30_downregulated
      WBPaper00036738:4uM_Heme_upregulated
      WBPaper00036738:500uM_Heme_upregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040990:PA14_upregulated
      WBPaper00041163:hly(+)-V-cholerae_induced
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045017:blmp-1(tm548)_upregulated
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046499:AMPK_regulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
      WBPaper00050193:cec-4(ok3124)_upregulated_L1
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00051404:alg-5(ram2)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055137:S.maltophilia_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00055969:electromagnetic-field_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056039:efa-6(tm3124)_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056165:mina-1(ok1521)_downregulated_transcript
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056290:mdt-15(mg584)_downregulated
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_N2
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADEsh
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:CEPso
      WBPaper00061340:DB
      WBPaper00061340:hmc_and_homolog
      WBPaper00061340:hmc_homolog
      WBPaper00061340:ILsh_OLLsh_OLQsh
      WBPaper00061340:M_cell
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:tnt-4-myo-1_2160
      WBPaper00061653:alh-4(hj221)_downregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062095:unc-4(e120)_upregulated_VA-neuron
      WBPaper00062118:neural-HSF-1_upregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062197:mec-8_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062347:blmp-1(tm548)_upregulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062440:crh-1(syb385)_downregulated
      WBPaper00062590:Aging_upregulated_body-wall-muscle
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064156:lbp-3(overexpress)_upregulated
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_downregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00064716:paraquat_downregulated
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:hypoxia_downregulated_F3
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065199:Transgeneration-starvation_regulated_fed
      WBPaper00065272:dhgd-1(tm6671)_upregulated
      WBPaper00065746:tmc-1(rg1003)_downregulated
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript
      WBPaper00065945:global-rpoa-2(-)_downregulated_transcript
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00027722:Microbacterium_nematophilum_upregulated
      WBPaper00028789:PA14_vs_gacA_upregulated_4hr
      WBPaper00028789:PA14_vs_OP50_upregulated_4hr
      WBPaper00031003:hlh_1_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031703:heme_responsive_2
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00032948:StarveUp1
      WBPaper00033101:spr-5_regulated
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_G
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00036464:S.aureus-RN6390_regulated
      WBPaper00037113:CPF_DZN_16C_up-regulated
      WBPaper00037113:DZN_16C_up-regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:Q50_down
      WBPaper00040963:TA300_up
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041960:kgb-1_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00050538:Fasting_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
    Interaction: WBInteraction000542766
      WBInteraction000546109
  Map_info: Positive: Positive_clone: Y54G2A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV -6.74094
  Reference: WBPaper00064293
  Method: Gene