WormBase Tree Display for Variation: WBVar01568556
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WBVar01568556 | Name | Public_name | WBVar01568556 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00154319 | |||||||
Y54G2A.11b.3:c.-706C>T | ||||||||
Y54G2A.11b.1:c.-2346C>T | ||||||||
Y54G2A.11a.1:c.519C>T | ||||||||
CE27483:p.Ile173= | ||||||||
Y54G2A.11b.2:c.-706C>T | ||||||||
HGVSg | CHROMOSOME_IV:g.2769831G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | GGAGAAGATTAGGATTCGGGGAAAGCCCAG | ATTGGGGAGTTGTCTGAATTAAAAAAAAAT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2769829 | 2769829 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | A | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021876 | ||||||
Transcript | Y54G2A.11b.3 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11b.3:c.-706C>T | |||||||
cDNA_position | 15 | |||||||
Exon_number | 1/6 | |||||||
Y54G2A.11b.1 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11b.1:c.-2346C>T | |||||||
cDNA_position | 576 | |||||||
Exon_number | 3/7 | |||||||
Y54G2A.11a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.11a.1:c.519C>T | |||||||
HGVSp | CE27483:p.Ile173= | |||||||
cDNA_position | 574 | |||||||
CDS_position | 519 | |||||||
Protein_position | 173 | |||||||
Exon_number | 4/8 | |||||||
Codon_change | atC/atT | |||||||
Amino_acid_change | I | |||||||
Y54G2A.11b.2 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11b.2:c.-706C>T | |||||||
cDNA_position | 457 | |||||||
Exon_number | 2/7 | |||||||
Method | WGS_Flibotte |