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WormBase Tree Display for Variation: WBVar01568556

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Name Class

WBVar01568556NamePublic_nameWBVar01568556
Other_namecewivar00154319
Y54G2A.11b.3:c.-706C>T
Y54G2A.11b.1:c.-2346C>T
Y54G2A.11a.1:c.519C>T
CE27483:p.Ile173=
Y54G2A.11b.2:c.-706C>T
HGVSgCHROMOSOME_IV:g.2769831G>A
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesGGAGAAGATTAGGATTCGGGGAAAGCCCAGATTGGGGAGTTGTCTGAATTAAAAAAAAAT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV27698292769829From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00023018From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021876
TranscriptY54G2A.11b.3VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.11b.3:c.-706C>T
cDNA_position15
Exon_number1/6
Y54G2A.11b.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.11b.1:c.-2346C>T
cDNA_position576
Exon_number3/7
Y54G2A.11a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.11a.1:c.519C>T
HGVSpCE27483:p.Ile173=
cDNA_position574
CDS_position519
Protein_position173
Exon_number4/8
Codon_changeatC/atT
Amino_acid_changeI
Y54G2A.11b.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.11b.2:c.-706C>T
cDNA_position457
Exon_number2/7
MethodWGS_Flibotte