WormBase Tree Display for Variation: WBVar00186387
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| WBVar00186387 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00186387 | |||
| Other_name | haw53663 | ||||
| haw150640 | |||||
| cewivar00035775 | |||||
| Y54G2A.11b.2:c.*215A>T | |||||
| Y54G2A.11b.3:c.*215A>T | |||||
| Y54G2A.11a.1:c.*215A>T | |||||
| Y54G2A.11b.1:c.*215A>T | |||||
| HGVSg | CHROMOSOME_IV:g.2765763T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
| Flanking_sequences | tttgcagagaaaattttaaaaaatt | aaaaaaaaagaaaaaaaaagttgaa | |||
| Mapping_target | Y54G2A | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00570505 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00021876 | |||
| Transcript | Y54G2A.11b.3 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y54G2A.11b.3:c.*215A>T | ||||
| cDNA_position | 1160 | ||||
| Exon_number | 6/6 | ||||
| Y54G2A.11b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y54G2A.11b.1:c.*215A>T | ||||
| cDNA_position | 3361 | ||||
| Exon_number | 7/7 | ||||
| Y54G2A.11a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y54G2A.11a.1:c.*215A>T | ||||
| cDNA_position | 1719 | ||||
| Exon_number | 8/8 | ||||
| Y54G2A.11b.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y54G2A.11b.2:c.*215A>T | ||||
| cDNA_position | 1602 | ||||
| Exon_number | 7/7 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw53663 | ||||
| Method | WGS_Hawaiian_Waterston |
