WormBase Tree Display for Gene: WBGene00012117

WBGene00012117 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 1
    Name: Sequence_name: T28B11.1
      Molecular_name: T28B11.1a
        T28B11.1a.1
        CE14335
        T28B11.1b
        CE47990
        T28B11.1a.2
        T28B11.1b.1
      Other_name: CELE_T28B11.1 Accession_evidence: NDB BX284605
      Public_name: T28B11.1
    DB_info: Database: AceView gene 5L194
        WormQTL gene WBGene00012117
        WormFlux gene WBGene00012117
        NDB locus_tag CELE_T28B11.1
        NCBI gene 179487
        RefSeq protein NM_073334.8
            NM_001276928.3
        TrEMBL UniProtAcc K8F7S4
            Q22842
        UniProt_GCRP UniProtAcc Q22842
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01044378
      WBVar01044379
      WBVar01044380
      WBVar01044381
      WBVar01044382
      WBVar01044383
      WBVar01044384
      WBVar01044385
      WBVar01044386
      WBVar00322682
      WBVar01044387
      WBVar02052073
      WBVar01974662
      WBVar01974663
      WBVar01044388
      WBVar01044389
      WBVar01974664
      WBVar01974665
      WBVar01044390
      WBVar01044391
      WBVar01974666
      WBVar01974667
      WBVar01044392
      WBVar01974668
      WBVar01044393
      WBVar02137033
      WBVar01484627
      WBVar01044394
      WBVar02137034
      WBVar01044395
      WBVar01484628
      WBVar02137035
      WBVar01044396
      WBVar02137036
      WBVar01044397
      WBVar01044398
      WBVar01044399
      WBVar01044400
      WBVar01044401
      WBVar00309259
      WBVar01044402
      WBVar01044403
      WBVar01044404
      WBVar01044405
      WBVar01044406
      WBVar01500097
      WBVar01044407
      WBVar01044408
      WBVar01044409
      WBVar01044410
      WBVar01044411
      WBVar01044412
      WBVar01044413
      WBVar01044414
      WBVar01461567
      WBVar01044415
      WBVar00304594
      WBVar01461568
      WBVar01044416
      WBVar01044417
      WBVar01044418
      WBVar01044419
      WBVar01044420
      WBVar01044421
      WBVar01044422
      WBVar01044423
      WBVar01044424
      WBVar01044425
      WBVar01044426
      WBVar01044427
      WBVar01044428
      WBVar01044429
      WBVar01044430
      WBVar01044431
      WBVar01044432
      WBVar01044433
      WBVar01044434
      WBVar01490187
      WBVar01044435
      WBVar00002195
      WBVar00263386
      WBVar01044436
      WBVar01044437
      WBVar01044438
      WBVar00002200
      WBVar01500129
      WBVar01044439
      WBVar02060845
      WBVar01044440
      WBVar01044441
      WBVar02060846
      WBVar00002205
      WBVar01044442
      WBVar02060847
      WBVar01044443
      WBVar02060848
      WBVar00002210
      WBVar02060849
      WBVar01044444
      WBVar02060850
      WBVar01044445
      WBVar00316875
      WBVar02060851
      WBVar01044446
      WBVar01044447
      WBVar00002215
      WBVar00589222
      WBVar00589224
      WBVar01044448
      WBVar01044449
      WBVar00589228
      WBVar00589229
      WBVar01044450
      WBVar00002220
      WBVar00589230
      WBVar01044451
      WBVar01044452
      WBVar01490573
      WBVar01044453
      WBVar00002225
      WBVar00320821
      WBVar01044454
      WBVar01044455
      WBVar01044456
      WBVar00002230
      WBVar01044457
      WBVar01044458
      WBVar01044459
      WBVar00002235
      WBVar01044460
      WBVar01044461
      WBVar01899476
      WBVar01044462
      WBVar00002240
      WBVar01044463
      WBVar01044464
      WBVar00002245
      WBVar01044465
      WBVar01044466
      WBVar01044467
      WBVar00002250
      WBVar01044468
      WBVar01044469
      WBVar02151514
      WBVar00469232
      WBVar01044470
      WBVar00002255
      WBVar01044471
      WBVar00469233
      WBVar01044472
      WBVar00469234
      WBVar01044473
      WBVar00469235
      WBVar01590115
      WBVar00308259
      WBVar00469236
      WBVar01590116
      WBVar01044474
      WBVar00002260
      WBVar01044475
      WBVar00469237
      WBVar01590117
      WBVar01590118
      WBVar00469238
      WBVar01044476
      WBVar00469239
      WBVar00002265
      WBVar01044477
      WBVar00469240
      WBVar01044478
      WBVar01044479
      WBVar00469241
      WBVar00469242
      WBVar01044480
      WBVar01495938
      WBVar01044481
      WBVar01617446
      WBVar00469243
      WBVar01044482
      WBVar00469244
      WBVar01044483
      WBVar00469245
      WBVar01497597
      WBVar01044484
      WBVar00469246
      WBVar01044485
      WBVar01865144
      WBVar00469247
      WBVar01044486
      WBVar01865145
      WBVar00469248
      WBVar01044487
      WBVar00469249
      WBVar01865146
      WBVar01865147
      WBVar01044488
      WBVar00469250
      WBVar01044489
      WBVar00469251
      WBVar01865148
      WBVar00469252
      WBVar01044490
      WBVar01865149
      WBVar00469253
      WBVar01044491
      WBVar01865150
      WBVar01865151
      WBVar00469254
      WBVar01044492
      WBVar01044493
      WBVar00469255
      WBVar01865152
      WBVar01044494
      WBVar01865153
      WBVar00469256
      WBVar01044495
      WBVar01865154
      WBVar00469257
      WBVar01044496
      WBVar01499450
      WBVar01865155
      WBVar00469258
      WBVar00469259
      WBVar01499451
      WBVar01044497
      WBVar01044498
      WBVar00469260
      WBVar00469261
      WBVar01044499
      WBVar00469262
      WBVar01044500
      WBVar00469263
      WBVar01044501
      WBVar00469264
      WBVar01044502
      WBVar00469265
      WBVar01044503
      WBVar01044504
      WBVar00469266
      WBVar00469267
      WBVar01044505
      WBVar00469268
      WBVar01044506
      WBVar01044507
      WBVar00469269
      WBVar00469270
      WBVar01570620
      WBVar01044508
      WBVar01044509
      WBVar00469271
      WBVar00469272
      WBVar01044510
      WBVar00277374
      WBVar01044511
      WBVar00469273
      WBVar00469274
      WBVar01044512
      WBVar00469275
      WBVar01044513
      WBVar00469276
      WBVar01044514
      WBVar01044515
      WBVar00469277
      WBVar01044516
      WBVar00469278
      WBVar00469279
      WBVar01044517
      WBVar01500208
      WBVar01044518
      WBVar00469280
      WBVar01500209
      WBVar00469281
      WBVar01044519
      WBVar00469282
      WBVar01044520
      WBVar00469283
      WBVar00469284
      WBVar00469285
      WBVar00469286
      WBVar00318972
      WBVar00272454
      WBVar00302236
      WBVar01743199
      WBVar01743200
      WBVar01044359
      WBVar01044360
      WBVar01044361
      WBVar01499316
      WBVar01044362
      WBVar01044363
      WBVar01044364
      WBVar01044365
      WBVar01044366
      WBVar01044367
      WBVar01044368
      WBVar01044369
      WBVar01044370
      WBVar01044371
      WBVar01044372
      WBVar01044373
      WBVar01044374
      WBVar01044375
      WBVar01044376
      WBVar01044377
    RNASeq_FPKM (74)
    Ortholog (24)
    Structured_description: Concise_description: T28B11.1 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp1 or with other proteins; about 5% to 15% of T28B11.1 transcripts are RNA edited to change A to G resulting in a change to residue 369 from an K to a E. Paper_evidence: WBPaper00012854
            WBPaper00045975
          Curator_confirmed: WBPerson1843
            WBPerson567
            WBPerson4025
          Date_last_updated: 29 Dec 2014 00:00:00
      Automated_description: Enriched in coelomocyte; germ line; mc3; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by fifteen chemicals including Cry5B; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; F-box-like domain superfamily; and Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28B11.1a
      T28B11.1b
    Corresponding_transcript: T28B11.1a.1
      T28B11.1a.2
      T28B11.1b.1
    Other_sequence: CRC10724_1
      CRC12102_1
      MC04254
      CSC02370_1
      CR07406
      MC00389
      CRC00865_1
      CBC07350_1
      CR01510
      FD516868.1
    Associated_feature (30)
  Experimental_info: RNAi_result (2)
    Expr_pattern: Expr1016789
      Expr1035354
      Expr1157925
      Expr2006596
      Expr2024813
    Microarray_results (24)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:coelomocytes_larva_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042477:prp-8(RNAi)_upregulated_RNAseq
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00048762:FOG-3_associated
      WBPaper00048988:neuron_expressed
      WBPaper00049159:Microwave_upregulated_adult
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050015:ifg-1(RNAi)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051404:alg-5(ram2)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
      WBPaper00054792:FOG-3_interacting
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061340:mc3
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:npp-8_4368-E01B7.1_7741
      WBPaper00061527:zfp-1_3975-smk-1_2897
      WBPaper00061651:PVW_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:CAMT-1_interacting
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
      WBPaper00064055:trl-1(cas1078)_downregulated_starved
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065841:13_0
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:sin-3(syb2172)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_6_5
      cgc4489_group_9
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027342:alpha-Synuclein(A53T)_downregulated
      WBPaper00031003:hlh_1_enriched
      WBPaper00031060:2-deoxy-D-glucose_upregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037611:GLD-2-associated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HQ_3d_0.2mM_Down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00044535:male_upregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045865:biofilm_upregulated_A
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053827:pyoverdine_upregulated
    Interaction: WBInteraction000238924
      WBInteraction000246544
      WBInteraction000340564
      WBInteraction000393246
      WBInteraction000461689
      WBInteraction000570159
  Map_info: Positive: Positive_clone: T28B11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 2.74512
  Reference: WBPaper00012854
  Method: Gene