WormBase Tree Display for Gene: WBGene00009628
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| WBGene00009628 | SMap | S_parent | Sequence | F42D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tatn-1 | Person_evidence | WBPerson2977 | |||||
| Sequence_name | F42D1.2 | ||||||||
| Molecular_name | F42D1.2 | ||||||||
| F42D1.2.1 | |||||||||
| CE10298 | |||||||||
| Other_name | CELE_F42D1.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | tatn-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Nov 2009 11:16:28 | WBPerson9133 | Name_change | CGC_name | tatn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tatn | ||||||||
| Allele (54) | |||||||||
| Strain | WBStrain00000172 | ||||||||
| WBStrain00037460 | |||||||||
| Component_of_genotype | WBGenotype00000122 | ||||||||
| WBGenotype00000127 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00009232 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010984 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016333 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | tatn-1 encodes a putative tyrosine aminotransferase, orthologous to human TAT (OMIM:276600, mutated in type II tyrosinemia); tatn-1 is expressed in larval and adult pharynx, hypodermis, body wall muscle, and intestine, and in adult vulval muscle and reproductive system; tatn-1 is required for the tyrosinemic phenotype of fah-1(RNAi) animals. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00031006 | |||||||||
| WBPaper00031468 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity. Involved in dauer entry. Human ortholog(s) of this gene implicated in tyrosinemia type II. Is an ortholog of human TAT (tyrosine aminotransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050725 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11573) | ||||
| DOID:9275 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11573) | ||||||
| Molecular_info | Corresponding_CDS | F42D1.2 | |||||||
| Corresponding_transcript | F42D1.2.1 | ||||||||
| Other_sequence (141) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00113315 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113142 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117421 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117425 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032137 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113086 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047093 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6041 | ||||||||
| Expr7955 | |||||||||
| Expr11472 | |||||||||
| Expr1016315 | |||||||||
| Expr1034206 | |||||||||
| Expr1150957 | |||||||||
| Expr2017305 | |||||||||
| Expr2035440 | |||||||||
| Drives_construct | WBCnstr00002453 | ||||||||
| WBCnstr00018685 | |||||||||
| WBCnstr00032042 | |||||||||
| Construct_product | WBCnstr00018685 | ||||||||
| WBCnstr00020586 | |||||||||
| WBCnstr00032042 | |||||||||
| Regulate_expr_cluster | WBPaper00044656:tatn-1(qd182)_downregulated | ||||||||
| WBPaper00044656:tatn-1(qd182)_upregulated | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (221) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | X | Position | 21.333 | Error | 0.00501 | |||
| Positive | Positive_clone | F42D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
