WormBase Tree Display for Gene: WBGene00009628
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WBGene00009628 | SMap | S_parent | Sequence | F42D1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | tatn-1 | Person_evidence | WBPerson2977 | |||
Sequence_name | F42D1.2 | ||||||
Molecular_name | F42D1.2 | ||||||
F42D1.2.1 | |||||||
CE10298 | |||||||
Other_name | CELE_F42D1.2 | Accession_evidence | NDB | BX284606 | |||
Public_name | tatn-1 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tatn | ||||||
Allele (54) | |||||||
Strain | WBStrain00000172 | ||||||
WBStrain00037460 | |||||||
Component_of_genotype | WBGenotype00000122 | ||||||
WBGenotype00000127 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog (40) | |||||||
Paralog | WBGene00009232 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00010984 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00011436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00016333 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | tatn-1 encodes a putative tyrosine aminotransferase, orthologous to human TAT (OMIM:276600, mutated in type II tyrosinemia); tatn-1 is expressed in larval and adult pharynx, hypodermis, body wall muscle, and intestine, and in adult vulval muscle and reproductive system; tatn-1 is required for the tyrosinemic phenotype of fah-1(RNAi) animals. | Paper_evidence | WBPaper00006525 | |||
WBPaper00031006 | |||||||
WBPaper00031468 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 14 Dec 2009 00:00:00 | ||||||
Automated_description | Predicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity. Involved in dauer entry. Human ortholog(s) of this gene implicated in tyrosinemia type II. Is an ortholog of human TAT (tyrosine aminotransferase). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0050725 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11573) | ||
DOID:9275 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11573) | ||||
Molecular_info | Corresponding_CDS | F42D1.2 | |||||
Corresponding_transcript | F42D1.2.1 | ||||||
Other_sequence (141) | |||||||
Associated_feature (11) | |||||||
Experimental_info | RNAi_result | WBRNAi00113315 | Inferred_automatically | RNAi_primary | |||
WBRNAi00113142 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00117421 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00117425 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032137 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113086 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047093 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr6041 | ||||||
Expr7955 | |||||||
Expr11472 | |||||||
Expr1016315 | |||||||
Expr1034206 | |||||||
Expr1150957 | |||||||
Expr2017305 | |||||||
Expr2035440 | |||||||
Drives_construct | WBCnstr00002453 | ||||||
WBCnstr00018685 | |||||||
WBCnstr00032042 | |||||||
Construct_product | WBCnstr00018685 | ||||||
WBCnstr00020586 | |||||||
WBCnstr00032042 | |||||||
Regulate_expr_cluster | WBPaper00044656:tatn-1(qd182)_downregulated | ||||||
WBPaper00044656:tatn-1(qd182)_upregulated | |||||||
Microarray_results (17) | |||||||
Expression_cluster (221) | |||||||
Interaction (66) | |||||||
Map_info | Map | X | Position | 21.333 | Error | 0.00501 | |
Positive | Positive_clone | F42D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (11) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |