WormBase Tree Display for Sequence: F42D1
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| F42D1 | DNA | F42D1 | 32258 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (14) | ||||
| CDS_child (126) | ||||||
| Transcript (16) | ||||||
| PCR_product (11) | ||||||
| Allele (668) | ||||||
| Oligo_set | Aff_F42D1.2 | 15247 | 15903 | |||
| Aff_F42D1.3 | 26237 | 27495 | ||||
| Aff_Y16B4A.1 | 4893 | 6305 | ||||
| Feature_object (213) | ||||||
| Feature_data | F42D1:Polysome | 1 | 32258 | |||
| F42D1:TranscriptionallyActiveRegion | 1 | 32258 | ||||
| F42D1:ChIPSeqTF | 1 | 32258 | ||||
| F42D1:TRF | 1 | 32258 | ||||
| F42D1:Dust | 1 | 32258 | ||||
| F42D1:inverted | 1 | 32258 | ||||
| Homol_data (22) | ||||||
| Structure | From | Source | CHROMOSOME_X | |||
| Overlap_right | T04C10 | 32158 | ||||
| Overlap_left | Y16B4A | |||||
| Clone_left_end | F42D1 | 1 | ||||
| T04C10 | 32158 | |||||
| DB_info | Database | EMBL | NDB_AC | Z81081 | ||
| NDB_SV | Z81081.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Lightning J | ||||
| From_laboratory | HX | |||||
| Date_directory | 960729 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F42D1 | ||||
| Reference | WBPaper00015364 | |||||
| WBPaper00022637 | ||||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | aff0d27e43fd08b47eff5645787a83e4 | ||||
| Status | Finished | 29 Jul 1996 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 14 Nov 1996 00:00:00 | |||||
| Map | Sequence-X | Ends | Left | 8018 | ||
| Right | 8037 | |||||
| Interpolated_map_position | X | 21.3349 | ||||
| Assembly_tags | Clone left end | 1 | 4 | F42D1 | ||
| 32158 | 32161 | T04C10 | ||||
| Finished Left | 1 | 1 | ||||
| annotation | 17375 | 17375 | All evidence is that this is a T although background at this position ishigh on all clones | |||
| 11595 | 11603 | Only able to cover these 9 bases with a single clone as it is in the middle of a large inverted repeat and hence isnot well represented. | ||||
| 21451 | 21451 | Reads that travel through poly G regiondo not show a G here in all cases. Reads approaching from the other direction, however, show a very clear G | ||||
| 30209 | 30455 | Not able to obtain a primer read across this area, only terminator reads. | ||||
| Finished Right | 32258 | 32258 | ||||
| Method | Genomic_canonical |
