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WormBase Tree Display for Gene: WBGene00007134

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Name Class

WBGene00007134SMapS_parentSequenceB0284
IdentityVersion2
NameCGC_namepals-28Person_evidenceWBPerson260
Sequence_nameB0284.4
Molecular_nameB0284.4
WP:CE00652
CE00652
B0284.4.1
Other_nameCELE_B0284.4Accession_evidenceNDBBX284603
Public_namepals-28
DB_infoDatabaseAceViewgene3F475
WormQTLgeneWBGene00007134
WormFluxgeneWBGene00007134
NDBlocus_tagCELE_B0284.4
NCBIgene181903
RefSeqmRNANM_065484.1
proteinNP_497885.1
NM_065484.1
TREEFAMTREEFAM_IDTF322628
UniProtUniProtAccQ17468
TrEMBLUniProtAccQ17468
UniProt_GCRPUniProtAccQ17468
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:47WBPerson1971EventImportedInitial conversion from CDS class of WS125
226 Oct 2016 09:42:35WBPerson2970Name_changeCGC_namepals-28
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpals
Allele (28)
RNASeq_FPKM (74)
OrthologWBGene00028845Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP26.g3004Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g3005Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP40.g1855Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g18005Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g18455Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00680.g14347Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_019033Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30075900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7437Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00007131Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00007132Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00007657Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007659Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00007660Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012505Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in cephalic sheath cell and dopaminergic neurons based on tiling array studies. Is affected by several genes including skn-1; eat-2; and elt-2 based on microarray and RNA-seq studies. Is affected by ten chemicals including methylmercuric chloride; nanoparticle; and metformin based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0284.4
Corresponding_transcriptB0284.4.1
Associated_featureWBsf992108
WBsf992109
WBsf992110
WBsf992111
WBsf1014743
Experimental_infoRNAi_resultWBRNAi00028057Inferred_automaticallyRNAi_primary
WBRNAi00038868Inferred_automaticallyRNAi_primary
WBRNAi00005134Inferred_automaticallyRNAi_primary
WBRNAi00009664Inferred_automaticallyRNAi_primary
WBRNAi00070097Inferred_automaticallyRNAi_primary
Expr_patternExpr1016928
Expr1143058
Expr2014701
Expr2032936
Microarray_results (14)
Expression_clusterWBPaper00032425:up_in_lin-35
WBPaper00032528:L3_depleted
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_adult_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00044316:CH3HgCl_2.0uM_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045401:N.parisii_8h_upregulated
WBPaper00045401:N.parisii_16h_upregulated
WBPaper00045401:N.parisii_30h_upregulated
WBPaper00045401:N.parisii_40h_upregulated
WBPaper00049484:elt-2(RNAi)_upregulated_L4
WBPaper00049635:dop-1(vs100)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00053020:OrsayVirus-infection_upregulated
WBPaper00053020:OrsayVirus-infection_upregulated_microarray
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053657:JU2519_M.humicola-infection_24hr
WBPaper00053657:N2_M.humicola-infection_24hr
WBPaper00053737:Anatase-TiO2-Nanoparticles_upregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055226:adr-1(tm668)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00059426:SiO2-nanoparticles_downregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060871:M.humicola-extract_1h_regulated
WBPaper00060871:M.humicola-extract_4h_regulated
WBPaper00060871:M.humicola-infection_12h_regulated
WBPaper00060871:M.humicola-infection_24h_regulated
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00060921:cat-2(e1112)_upregulated
WBPaper00060921:tdc-1(n3419)_upregulated
WBPaper00060921:tph-1(mg280)_upregulated
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:C17H1.6-C17H1.13
WBPaper00061853:osm-3(dh441)_upregulated_tunicamycin
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062345:bortezomib_30min_upregulated_N2
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064532:pals-25(jy111)_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:JU1400_N.parisii_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065995:M.humicola-extract_downregulated_N2
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00035227:heat_shock_regulated
WBPaper00036286:Pattern_H
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_24h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042574:N2_OrsayVirus_upregulated
WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
WBPaper00044535:male_upregulated
WBPaper00045401:N.parisii_34h_upregulated_N2
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00055435:AuNPs_upregulated
WBPaper00055435:MUA-AuNP-0.5_upregulated
Interaction (16)
Map_infoPositivePositive_cloneB0284Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-3.17828
ReferenceWBPaper00061319
WBPaper00062345
MethodGene