WormBase Tree Display for Gene: WBGene00004924
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| WBGene00004924 | Evidence | Person_evidence | WBPerson298 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T23H2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snt-4 | Person_evidence | WBPerson508 | |||||
| Sequence_name | T23H2.2 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | CELE_T23H2.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | snt-4 | ||||||||
| DB_info | Database | AceView | gene | 1H17 | |||||
| WormQTL | gene | WBGene00004924 | |||||||
| WormFlux | gene | WBGene00004924 | |||||||
| NDB | locus_tag | CELE_T23H2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004924|UniProtKB=P91493 | |||||||
| family | PTHR10024 | ||||||||
| NCBI | gene | 172346 | |||||||
| RefSeq | protein | NM_059452.9 | |||||||
| TrEMBL | UniProtAcc | P91493 | |||||||
| UniProt_GCRP | UniProtAcc | P91493 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snt | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00031457 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004922 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004923 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Expressed in intestine. Is an ortholog of human SYT4 (synaptotagmin 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23H2.2 | |||||||
| Corresponding_transcript | T23H2.2.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf643368 | ||||||||
| WBsf656408 | |||||||||
| WBsf656409 | |||||||||
| WBsf983938 | |||||||||
| WBsf983939 | |||||||||
| WBsf1009957 | |||||||||
| WBsf217823 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004292 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112397 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094904 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035895 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001274 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053987 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram493 | ||||||||
| Expr4298 | |||||||||
| Expr6755 | |||||||||
| Expr1017961 | |||||||||
| Expr1032453 | |||||||||
| Expr1157532 | |||||||||
| Expr2015979 | |||||||||
| Expr2034214 | |||||||||
| Drives_construct | WBCnstr00002585 | ||||||||
| WBCnstr00011895 | |||||||||
| WBCnstr00035319 | |||||||||
| Construct_product | WBCnstr00035319 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (269) | |||||||||
| Interaction (46) | |||||||||
| Map_info | Map | I | Position | 1.09503 | Error | 0.003632 | |||
| Positive | Positive_clone | T23H2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4681 | |||||||
| 5563 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028592 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
