WormBase Tree Display for Gene: WBGene00004924

WBGene00004924 Evidence: Person_evidence: WBPerson298
  SMap: S_parent: Sequence: T23H2
  Identity: Version: 1
    Name: CGC_name: snt-4 Person_evidence: WBPerson508
      Sequence_name: T23H2.2
      Molecular_name: T23H2.2
        T23H2.2.1
        CE30456
      Other_name: CELE_T23H2.2 Accession_evidence: NDB BX284601
      Public_name: snt-4
    DB_info: Database: AceView gene 1H17
        WormQTL gene WBGene00004924
        WormFlux gene WBGene00004924
        NDB locus_tag CELE_T23H2.2
        Panther gene CAEEL|WormBase=WBGene00004924|UniProtKB=P91493
          family PTHR10024
        NCBI gene 172346
        RefSeq protein NM_059452.9
        TrEMBL UniProtAcc P91493
        UniProt_GCRP UniProtAcc P91493
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snt
    Allele (63)
    Strain: WBStrain00031457
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog: WBGene00068978 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033546 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00159031 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104197 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00133026 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226232 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g1805 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3839 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11126 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9628 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4217 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17617 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1167 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g13598 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g9869 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g9381 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00046.g2468 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_10767.g22849 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_12365.g23707 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-snt-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20345 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00675.g14292 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16148 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002808 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11793 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g22401 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10327700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1153 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237361 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00306036 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00290777 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0028400 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-030131-7297 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-2815 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-090601-7 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:11512 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:19239 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      MGI:101759 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1859547 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      RGD:62042 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      RGD:68397 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Paralog: WBGene00004921 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004922 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004923 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00011682 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004926 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004925 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004316 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006306 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020861 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Expressed in intestine. Is an ortholog of human SYT4 (synaptotagmin 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T23H2.2
    Corresponding_transcript: T23H2.2.1
    Other_sequence (34)
    Associated_feature: WBsf643368
      WBsf656408
      WBsf656409
      WBsf983938
      WBsf983939
      WBsf1009957
      WBsf217823
  Experimental_info: RNAi_result: WBRNAi00004292 Inferred_automatically: RNAi_primary
      WBRNAi00112397 Inferred_automatically: RNAi_primary
      WBRNAi00094904 Inferred_automatically: RNAi_primary
      WBRNAi00035895 Inferred_automatically: RNAi_primary
      WBRNAi00001274 Inferred_automatically: RNAi_primary
      WBRNAi00053987 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram493
      Expr4298
      Expr6755
      Expr1017961
      Expr1032453
      Expr1157532
      Expr2015979
      Expr2034214
    Drives_construct: WBCnstr00002585
      WBCnstr00011895
      WBCnstr00035319
    Construct_product: WBCnstr00035319
    Microarray_results (20)
    Expression_cluster (269)
    Interaction (46)
  Map_info: Map: I Position: 1.09503 Error: 0.003632
    Positive: Positive_clone: T23H2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4681
        5563
    Pseudo_map_position
  Reference: WBPaper00028592
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene