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WormBase Tree Display for Gene: WBGene00004924

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Name Class

WBGene00004924EvidencePerson_evidenceWBPerson298
SMapS_parentSequenceT23H2
IdentityVersion1
NameCGC_namesnt-4Person_evidenceWBPerson508
Sequence_nameT23H2.2
Molecular_nameT23H2.2
T23H2.2.1
CE30456
Other_nameCELE_T23H2.2Accession_evidenceNDBBX284601
Public_namesnt-4
DB_infoDatabaseAceViewgene1H17
WormQTLgeneWBGene00004924
WormFluxgeneWBGene00004924
NDBlocus_tagCELE_T23H2.2
PanthergeneCAEEL|WormBase=WBGene00004924|UniProtKB=P91493
familyPTHR10024
NCBIgene172346
RefSeqproteinNM_059452.9
TrEMBLUniProtAccP91493
UniProt_GCRPUniProtAccP91493
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnt
AlleleWBVar00643816
WBVar00643817
WBVar00091791
WBVar00643818
WBVar00643819
WBVar00643820
WBVar00643821
WBVar00643822
WBVar00643823
WBVar00643824
WBVar00262602
WBVar00643825
WBVar00643826
WBVar00643827
WBVar00643828
WBVar00643829
WBVar00643830
WBVar00643831
WBVar00643832
WBVar01431886
WBVar01475634
WBVar01475635
WBVar01902395
WBVar02124525
WBVar02122502
WBVar01496287
WBVar01499786
WBVar01499054
WBVar00336250
WBVar00336251
WBVar00336252
WBVar00336253
WBVar00336254
WBVar00336255
WBVar00336256
WBVar00336257
WBVar00336258
WBVar00336259
WBVar00336260
WBVar00336261
WBVar01492677
WBVar00154042
WBVar00643798
WBVar00643799
WBVar00643800
WBVar00643801
WBVar00643802
WBVar00643803
WBVar00643804
WBVar00643805
WBVar00643806
WBVar00643807
WBVar00643808
WBVar02072821
WBVar00643809
WBVar00643810
WBVar01498959
WBVar00643811
WBVar00643812
WBVar00643813
WBVar00643814
WBVar01694817
WBVar00643815
StrainWBStrain00031457
RNASeq_FPKM (74)
GO_annotation (16)
OrthologWBGene00068978Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033546Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00159031Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00104197Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00133026Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226232Brugia malayiFrom_analysisWormBase-Compara
CSP21.g1805Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3839Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11126Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9628Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4217Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17617Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1167Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13598Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9869Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9381Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00046.g2468Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10767.g22849Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_12365.g23707Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-snt-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20345Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00675.g14292Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16148Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002808Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11793Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22401Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10327700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1153Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237361Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00306036Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00290777Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0028400Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-030131-7297Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-2815Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-090601-7Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
Panther
PhylomeDB
HGNC:11512Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:19239Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
Panther
PhylomeDB
MGI:101759Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1859547Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
Panther
PhylomeDB
RGD:62042Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
Panther
PhylomeDB
RGD:68397Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ParalogWBGene00004921Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004922Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004923Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011682Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004926Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004925Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004316Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006306Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020861Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Expressed in intestine. Is an ortholog of human SYT4 (synaptotagmin 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST23H2.2
Corresponding_transcriptT23H2.2.1
Other_sequence (34)
Associated_featureWBsf643368
WBsf656408
WBsf656409
WBsf983938
WBsf983939
WBsf1009957
WBsf217823
Experimental_infoRNAi_resultWBRNAi00004292Inferred_automaticallyRNAi_primary
WBRNAi00112397Inferred_automaticallyRNAi_primary
WBRNAi00094904Inferred_automaticallyRNAi_primary
WBRNAi00035895Inferred_automaticallyRNAi_primary
WBRNAi00001274Inferred_automaticallyRNAi_primary
WBRNAi00053987Inferred_automaticallyRNAi_primary
Expr_patternChronogram493
Expr4298
Expr6755
Expr1017961
Expr1032453
Expr1157532
Expr2015979
Expr2034214
Drives_constructWBCnstr00002585
WBCnstr00011895
WBCnstr00035319
Construct_productWBCnstr00035319
Microarray_results (20)
Expression_cluster (269)
Interaction (46)
Map_infoMapIPosition1.09503Error0.003632
PositivePositive_cloneT23H2Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4681
5563
Pseudo_map_position
ReferenceWBPaper00028592
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene