WormBase Tree Display for Gene: WBGene00004503
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| WBGene00004503 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F23F12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpt-3 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F23F12.6 | ||||||||
| Molecular_name | F23F12.6 | ||||||||
| F23F12.6.1 | |||||||||
| CE01253 | |||||||||
| Other_name | CELE_F23F12.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpt-3 | ||||||||
| DB_info | Database | AceView | gene | 3H581 | |||||
| WormQTL | gene | WBGene00004503 | |||||||
| WormFlux | gene | WBGene00004503 | |||||||
| NDB | locus_tag | CELE_F23F12.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004503|UniProtKB=P46502 | |||||||
| family | PTHR23073 | ||||||||
| NCBI | gene | 175925 | |||||||
| RefSeq | protein | NM_066028.5 | |||||||
| SwissProt | UniProtAcc | P46502 | |||||||
| TREEFAM | TREEFAM_ID | TF106227 | |||||||
| UniProt_GCRP | UniProtAcc | P46502 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpt | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00051268 | ||||||||
| WBStrain00050860 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00004501 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004502 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004504 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015688 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004506 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018991 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004505 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpt-3 encodes a triple A ATPase subunit of the 26S proteasome's 19S regulatory particle (RP) base subcomplex; RPT-3 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding protein substrates and translocating them into the core proteolytic particle (CP) of the proteasome. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005553 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable proteasome-activating activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is an ortholog of human PSMC4 (proteasome 26S subunit, ATPase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23F12.6 | |||||||
| Corresponding_transcript | F23F12.6.1 | ||||||||
| Other_sequence (142) | |||||||||
| Associated_feature | WBsf659078 | ||||||||
| WBsf225120 | |||||||||
| Experimental_info | RNAi_result (39) | ||||||||
| Expr_pattern | Chronogram187 | ||||||||
| Expr5840 | |||||||||
| Expr1012744 | |||||||||
| Expr1032305 | |||||||||
| Expr1149355 | |||||||||
| Expr2015536 | |||||||||
| Expr2033771 | |||||||||
| Drives_construct | WBCnstr00003808 | ||||||||
| WBCnstr00035439 | |||||||||
| WBCnstr00038033 | |||||||||
| Construct_product | WBCnstr00035439 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (146) | |||||||||
| Interaction (329) | |||||||||
| WBProcess | WBbiopr:00000120 | ||||||||
| Map_info | Map | III | Position | -1.18757 | Error | 0.003233 | |||
| Positive | Positive_clone | F23F12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027739 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00056554 | |||||||||
| WBPaper00057217 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
