WormBase Tree Display for Gene: WBGene00004503

WBGene00004503 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F23F12
  Identity: Version: 1
    Name: CGC_name: rpt-3 Person_evidence: WBPerson1551
      Sequence_name: F23F12.6
      Molecular_name: F23F12.6
        F23F12.6.1
        CE01253
      Other_name: CELE_F23F12.6 Accession_evidence: NDB BX284603
      Public_name: rpt-3
    DB_info: Database: AceView gene 3H581
        WormQTL gene WBGene00004503
        WormFlux gene WBGene00004503
        NDB locus_tag CELE_F23F12.6
        Panther gene CAEEL|WormBase=WBGene00004503|UniProtKB=P46502
          family PTHR23073
        NCBI gene 175925
        RefSeq protein NM_066028.5
        SwissProt UniProtAcc P46502
        TREEFAM TREEFAM_ID TF106227
        UniProt_GCRP UniProtAcc P46502
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpt
    Allele (19)
    Strain: WBStrain00051268
      WBStrain00050860
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog: WBGene00055503 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00027383 Caenorhabditis briggsae From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00030763 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00145105 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00125809 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00090732 Pristionchus pacificus From_analysis: OMA
      WBGene00147825 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00155336 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00231441 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4814 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11847 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4225 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9634 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8218 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13373 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g18066 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1485 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20168 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g81 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00251.g7901 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00251.g7912 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g20744 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11762 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20008 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00263.g8220 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06444 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_020378 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g20826 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30174910 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7954 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00208696 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00057031 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00246651 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278825 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00255806 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292258 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002802 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0028686 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0037742 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5083 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9551 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1346093 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621102 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00004501 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004502 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004504 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015688 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004506 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018991 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004505 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: rpt-3 encodes a triple A ATPase subunit of the 26S proteasome's 19S regulatory particle (RP) base subcomplex; RPT-3 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding protein substrates and translocating them into the core proteolytic particle (CP) of the proteasome. Paper_evidence: WBPaper00004403
            WBPaper00005553
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable proteasome-activating activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is an ortholog of human PSMC4 (proteasome 26S subunit, ATPase 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F23F12.6
    Corresponding_transcript: F23F12.6.1
    Other_sequence (142)
    Associated_feature: WBsf659078
      WBsf225120
  Experimental_info: RNAi_result (39)
    Expr_pattern: Chronogram187
      Expr5840
      Expr1012744
      Expr1032305
      Expr1149355
      Expr2015536
      Expr2033771
    Drives_construct: WBCnstr00003808
      WBCnstr00035439
      WBCnstr00038033
    Construct_product: WBCnstr00035439
    Microarray_results (21)
    Expression_cluster (146)
    Interaction (329)
    WBProcess: WBbiopr:00000120
  Map_info: Map: III Position: -1.18757 Error: 0.003233
    Positive: Positive_clone: F23F12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027739
    WBPaper00029221
    WBPaper00035228
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00056008
    WBPaper00056554
    WBPaper00057217
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene