WormBase Tree Display for Gene: WBGene00004504
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| WBGene00004504 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F23F1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpt-4 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F23F1.8 | ||||||||
| Molecular_name | F23F1.8a | ||||||||
| F23F1.8a.1 | |||||||||
| CE29280 | |||||||||
| F23F1.8b | |||||||||
| CE09608 | |||||||||
| F23F1.8b.1 | |||||||||
| Other_name | CELE_F23F1.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rpt-4 | ||||||||
| DB_info | Database | AceView | gene | 2A332 | |||||
| WormQTL | gene | WBGene00004504 | |||||||
| WormFlux | gene | WBGene00004504 | |||||||
| NDB | locus_tag | CELE_F23F1.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004504|UniProtKB=O17071 | |||||||
| family | PTHR23073 | ||||||||
| NCBI | gene | 173384 | |||||||
| RefSeq | protein | NM_001026943.5 | |||||||
| NM_001026942.5 | |||||||||
| SwissProt | UniProtAcc | O17071 | |||||||
| TREEFAM | TREEFAM_ID | TF106229 | |||||||
| UniProt_GCRP | UniProtAcc | O17071 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpt | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00002630 | ||||||||
| WBStrain00049349 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Contained_in_operon | CEOP2672 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00004501 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004502 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004503 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004505 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004506 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015688 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018991 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpt-4 encodes a predicted ATPase subunit of the 19S regulatory complex of the proteasome that affects body morphology, embryonic viability, growth, movement, and fertility; interacts with itself in yeast two-hybrid assays. | Paper_evidence | WBPaper00004888 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables identical protein binding activity. Involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of protein stability. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Is an ortholog of human PSMC6 (proteasome 26S subunit, ATPase 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23F1.8a | |||||||
| F23F1.8b | |||||||||
| Corresponding_CDS_history | F23F1.8:wp135 | ||||||||
| Corresponding_transcript | F23F1.8a.1 | ||||||||
| F23F1.8b.1 | |||||||||
| Other_sequence (143) | |||||||||
| Associated_feature | WBsf649797 | ||||||||
| WBsf649798 | |||||||||
| WBsf665289 | |||||||||
| WBsf222552 | |||||||||
| WBsf222553 | |||||||||
| Experimental_info | RNAi_result (37) | ||||||||
| Expr_pattern | Expr5838 | ||||||||
| Expr1017705 | |||||||||
| Expr1032306 | |||||||||
| Expr1149348 | |||||||||
| Expr2015537 | |||||||||
| Expr2033772 | |||||||||
| Drives_construct | WBCnstr00003180 | ||||||||
| WBCnstr00035438 | |||||||||
| Construct_product | WBCnstr00035438 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction (224) | |||||||||
| Map_info | Map | II | Position | -17.9704 | Error | 0.006171 | |||
| Positive | Positive_clone | F23F1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004888 | ||||||||
| WBPaper00018287 | |||||||||
| WBPaper00026640 | |||||||||
| WBPaper00029221 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048675 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00062237 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
