WormBase Tree Display for Gene: WBGene00004502
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| WBGene00004502 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F29G9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpt-2 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F29G9.5 | ||||||||
| Molecular_name | F29G9.5 | ||||||||
| F29G9.5.1 | |||||||||
| CE09799 | |||||||||
| Other_name | CELE_F29G9.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rpt-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpt | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00004501 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004503 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004504 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015688 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004506 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018991 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004505 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables ubiquitin protein ligase binding activity. Involved in negative regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Expressed in head. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with poor growth, spastic tetraplegia, and hearing loss. Is an ortholog of human PSMC1 (proteasome 26S subunit, ATPase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9547) | ||||
| Molecular_info | Corresponding_CDS | F29G9.5 | |||||||
| Corresponding_transcript | F29G9.5.1 | ||||||||
| Other_sequence (154) | |||||||||
| Associated_feature | WBsf652671 | ||||||||
| WBsf652672 | |||||||||
| WBsf233748 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00063265 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078752 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095597 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008197 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031591 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111148 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095200 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045946 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram756 | ||||||||
| Expr5917 | |||||||||
| Expr1014406 | |||||||||
| Expr1032304 | |||||||||
| Expr1149843 | |||||||||
| Expr2015535 | |||||||||
| Expr2033770 | |||||||||
| Drives_construct | WBCnstr00002445 | ||||||||
| WBCnstr00035440 | |||||||||
| Construct_product | WBCnstr00035440 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (157) | |||||||||
| Interaction (254) | |||||||||
| Map_info | Map | V | Position | -0.454333 | Error | 0.003283 | |||
| Positive | Positive_clone | F29G9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026640 | ||||||||
| WBPaper00026844 | |||||||||
| WBPaper00029221 | |||||||||
| WBPaper00029296 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00060685 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
