WormBase Tree Display for Gene: WBGene00004503

WBGene00004503 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F23F12
  Identity: Version: 1
    Name: CGC_name: rpt-3 Person_evidence: WBPerson1551
      Sequence_name: F23F12.6
      Molecular_name: F23F12.6
        F23F12.6.1
        CE01253
      Other_name: CELE_F23F12.6 Accession_evidence: NDB BX284603
      Public_name: rpt-3
    DB_info: Database: AceView gene 3H581
        WormQTL gene WBGene00004503
        WormFlux gene WBGene00004503
        NDB locus_tag CELE_F23F12.6
        Panther gene CAEEL|WormBase=WBGene00004503|UniProtKB=P46502
          family PTHR23073
        NCBI gene 175925
        RefSeq protein NM_066028.5
        SwissProt UniProtAcc P46502
        TREEFAM TREEFAM_ID TF106227
        UniProt_GCRP UniProtAcc P46502
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpt
    Allele (19)
    Strain: WBStrain00051268
      WBStrain00050860
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog (43)
    Paralog: WBGene00004501 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004502 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004504 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015688 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004506 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018991 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004505 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: rpt-3 encodes a triple A ATPase subunit of the 26S proteasome's 19S regulatory particle (RP) base subcomplex; RPT-3 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding protein substrates and translocating them into the core proteolytic particle (CP) of the proteasome. Paper_evidence: WBPaper00004403
            WBPaper00005553
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable proteasome-activating activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is an ortholog of human PSMC4 (proteasome 26S subunit, ATPase 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F23F12.6
    Corresponding_transcript: F23F12.6.1
    Other_sequence: TSC04627_1
      SSC05983_1
      ACC12544_1
      ACC32053_1
      GRC02370_1
      MI00345
      DVC01884_1
      SR03325
      HG00291
      ACC05120_1
      RS06283
      CR04621
      FK808059.1
      EX554401.1
      GR978921.1
      Tcol_isotig01148
      Tcol_isotig01147
      CR11890
      Dviv_isotig21950
      MA00383
      Tcol_isotig01144
      MHC09604_1
      CJC04099_1
      ACC18944_1
      TS04209
      FC819538.1
      EX910627.1
      Tcol_isotig01141
      JI174430.1
      FG584349.1
      HGC04583_1
      EY468318.1
      JI217182.1
      TS01694
      CBC02271_1
      CR11030
      Acan_isotig08111
      ACC28258_1
      ES411137.1
      FG580291.1
      HG02551
      JO469220.1
      Hbac_isotig01670
      CR04622
      SSC06243_1
      EX557236.1
      DAC00232_1
      JI252271.1
      ACC00939_1
      Acan_isotig09017
      ASC22743_1
      NAC01159_1
      TSC02478_1
      SRC04586_1
      XI04665
      EX008388.1
      Tcol_isotig01140
      CR11031
      PTC02224_1
      Tcol_isotig01143
      GPC01794_1
      SC00232
      FC819317.1
      Name_isotig02063
      MAC02728_1
      FC813479.1
      DA05291
      EX566949.1
      GR977560.1
      EX556084.1
      Tcol_isotig26862
      AE02013
      GP00360
      AYC04261_1
      JI473600.1
      MH02488
      EV852434.1
      AS17190
      CBC15497_1
      FC539782.1
      FC549845.1
      EY463173.1
      Tcol_isotig01150
      FK805106.1
      BXC07858_1
      JI459654.1
      Tcol_isotig01145
      Tcol_isotig01142
      LSC00918_1
      GR979245.1
      FC552329.1
      FC811099.1
      BXC07572_1
      GPC02570_1
      Tcol_isotig01139
      Oden_isotig19603
      GR978242.1
      ES561106.1
      FC813167.1
      FK803879.1
      JO469221.1
      MHC01398_1
      EY467524.1
      Tcir_isotig05162
      CR01639
      MH01517
      CRC07310_1
      EY471520.1
      SC01302
      SC00934
      EY467531.1
      Tcir_isotig16705
      BI773003.1
      BU666678.1
      XIC05371_1
      BXC01623_1
      SC01015
      SR02103
      Tcol_isotig01149
      GR13233
      Tcol_isotig01146
      EY471541.1
      RSC01189_1
      SRC05326_1
      Tcir_isotig28107
      CRC03098_1
      XI04751
      GPC01786_1
      HBC01359_2
      XIC05243_1
      ES273215.1
      JI463698.1
      FC818901.1
      DN557931.1
      GP02439
      SS02076
      CBC11904_1
      MIC01765_1
      FC816573.1
      EX565200.1
      FC551875.1
      ES273014.1
    Associated_feature: WBsf659078
      WBsf225120
  Experimental_info: RNAi_result (39)
    Expr_pattern: Chronogram187
      Expr5840
      Expr1012744
      Expr1032305
      Expr1149355
      Expr2015536
      Expr2033771
    Drives_construct: WBCnstr00003808
      WBCnstr00035439
      WBCnstr00038033
    Construct_product: WBCnstr00035439
    Microarray_results (21)
    Expression_cluster (146)
    Interaction (329)
    WBProcess: WBbiopr:00000120
  Map_info: Map: III Position: -1.18757 Error: 0.003233
    Positive: Positive_clone: F23F12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027739
    WBPaper00029221
    WBPaper00035228
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00056008
    WBPaper00056554
    WBPaper00057217
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene