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WormBase Tree Display for Gene: WBGene00004503

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Name Class

WBGene00004503EvidenceCGC_data_submission
SMapS_parentSequenceF23F12
IdentityVersion1
NameCGC_namerpt-3Person_evidenceWBPerson1551
Sequence_nameF23F12.6
Molecular_nameF23F12.6
F23F12.6.1
CE01253
Other_nameCELE_F23F12.6Accession_evidenceNDBBX284603
Public_namerpt-3
DB_infoDatabaseAceViewgene3H581
WormQTLgeneWBGene00004503
WormFluxgeneWBGene00004503
NDBlocus_tagCELE_F23F12.6
PanthergeneCAEEL|WormBase=WBGene00004503|UniProtKB=P46502
familyPTHR23073
NCBIgene175925
RefSeqproteinNM_066028.5
SwissProtUniProtAccP46502
TREEFAMTREEFAM_IDTF106227
UniProt_GCRPUniProtAccP46502
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpt
Allele (19)
StrainWBStrain00051268
WBStrain00050860
RNASeq_FPKM (74)
GO_annotation (13)
Ortholog (43)
ParalogWBGene00004501Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004502Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004504Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015688Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004506Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018991Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004505Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionrpt-3 encodes a triple A ATPase subunit of the 26S proteasome's 19S regulatory particle (RP) base subcomplex; RPT-3 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding protein substrates and translocating them into the core proteolytic particle (CP) of the proteasome.Paper_evidenceWBPaper00004403
WBPaper00005553
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable proteasome-activating activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is an ortholog of human PSMC4 (proteasome 26S subunit, ATPase 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF23F12.6
Corresponding_transcriptF23F12.6.1
Other_sequence (142)
Associated_featureWBsf659078
WBsf225120
Experimental_infoRNAi_result (39)
Expr_patternChronogram187
Expr5840
Expr1012744
Expr1032305
Expr1149355
Expr2015536
Expr2033771
Drives_constructWBCnstr00003808
WBCnstr00035439
WBCnstr00038033
Construct_productWBCnstr00035439
Microarray_results (21)
Expression_cluster (146)
InteractionWBInteraction000030815
WBInteraction000034484
WBInteraction000034986
WBInteraction000035083
WBInteraction000035157
WBInteraction000035276
WBInteraction000035648
WBInteraction000035649
WBInteraction000036319
WBInteraction000036505
WBInteraction000036510
WBInteraction000036729
WBInteraction000037022
WBInteraction000037029
WBInteraction000037037
WBInteraction000037577
WBInteraction000038076
WBInteraction000038449
WBInteraction000038450
WBInteraction000039913
WBInteraction000040294
WBInteraction000040640
WBInteraction000040705
WBInteraction000040757
WBInteraction000040770
WBInteraction000040779
WBInteraction000040788
WBInteraction000041231
WBInteraction000041235
WBInteraction000041398
WBInteraction000041829
WBInteraction000043624
WBInteraction000044141
WBInteraction000044278
WBInteraction000044521
WBInteraction000044522
WBInteraction000044896
WBInteraction000045187
WBInteraction000045229
WBInteraction000045563
WBInteraction000045806
WBInteraction000046616
WBInteraction000046617
WBInteraction000046634
WBInteraction000046635
WBInteraction000046636
WBInteraction000046637
WBInteraction000046729
WBInteraction000047425
WBInteraction000047863
WBInteraction000048743
WBInteraction000048756
WBInteraction000048771
WBInteraction000048795
WBInteraction000048999
WBInteraction000049007
WBInteraction000049389
WBInteraction000049535
WBInteraction000050249
WBInteraction000050303
WBInteraction000050304
WBInteraction000050305
WBInteraction000050306
WBInteraction000050307
WBInteraction000050308
WBInteraction000050776
WBInteraction000050812
WBInteraction000051831
WBInteraction000100904
WBInteraction000101492
WBInteraction000101851
WBInteraction000101868
WBInteraction000101876
WBInteraction000101957
WBInteraction000102646
WBInteraction000103045
WBInteraction000103256
WBInteraction000103363
WBInteraction000104270
WBInteraction000104976
WBInteraction000105028
WBInteraction000105102
WBInteraction000105368
WBInteraction000105734
WBInteraction000105880
WBInteraction000106581
WBInteraction000107035
WBInteraction000107227
WBInteraction000109961
WBInteraction000110444
WBInteraction000110764
WBInteraction000111243
WBInteraction000111452
WBInteraction000111484
WBInteraction000111503
WBInteraction000111521
WBInteraction000111638
WBInteraction000111639
WBInteraction000111640
WBInteraction000111641
WBInteraction000111642
WBInteraction000111643
WBInteraction000111644
WBInteraction000111645
WBInteraction000111646
WBInteraction000111747
WBInteraction000112160
WBInteraction000114694
WBInteraction000115050
WBInteraction000118128
WBInteraction000121016
WBInteraction000122848
WBInteraction000125021
WBInteraction000125904
WBInteraction000134624
WBInteraction000135422
WBInteraction000135693
WBInteraction000144894
WBInteraction000148595
WBInteraction000148892
WBInteraction000148980
WBInteraction000151273
WBInteraction000152963
WBInteraction000155112
WBInteraction000155113
WBInteraction000155114
WBInteraction000155115
WBInteraction000156914
WBInteraction000160158
WBInteraction000161986
WBInteraction000162012
WBInteraction000168614
WBInteraction000178674
WBInteraction000178675
WBInteraction000185356
WBInteraction000188407
WBInteraction000190357
WBInteraction000191289
WBInteraction000192226
WBInteraction000194229
WBInteraction000195887
WBInteraction000196839
WBInteraction000197018
WBInteraction000197054
WBInteraction000198589
WBInteraction000199899
WBInteraction000201809
WBInteraction000204375
WBInteraction000205976
WBInteraction000209511
WBInteraction000211180
WBInteraction000212623
WBInteraction000214170
WBInteraction000215113
WBInteraction000215366
WBInteraction000215367
WBInteraction000215368
WBInteraction000215369
WBInteraction000215370
WBInteraction000217105
WBInteraction000221026
WBInteraction000222872
WBInteraction000222873
WBInteraction000222874
WBInteraction000223466
WBInteraction000223744
WBInteraction000223867
WBInteraction000228653
WBInteraction000233897
WBInteraction000234902
WBInteraction000235049
WBInteraction000235050
WBInteraction000236137
WBInteraction000239799
WBInteraction000241178
WBInteraction000243930
WBInteraction000246566
WBInteraction000247291
WBInteraction000253551
WBInteraction000255227
WBInteraction000257789
WBInteraction000261355
WBInteraction000262718
WBInteraction000265514
WBInteraction000273456
WBInteraction000277329
WBInteraction000277614
WBInteraction000281440
WBInteraction000283788
WBInteraction000283789
WBInteraction000288905
WBInteraction000289596
WBInteraction000292093
WBInteraction000295450
WBInteraction000299630
WBInteraction000307510
WBInteraction000308111
WBInteraction000310787
WBInteraction000312080
WBInteraction000313922
WBInteraction000314071
WBInteraction000314983
WBInteraction000315262
WBInteraction000316169
WBInteraction000318389
WBInteraction000319205
WBInteraction000320028
WBInteraction000321338
WBInteraction000326227
WBInteraction000326686
WBInteraction000329334
WBInteraction000331922
WBInteraction000331982
WBInteraction000336916
WBInteraction000337446
WBInteraction000340849
WBInteraction000340850
WBInteraction000340851
WBInteraction000340969
WBInteraction000341200
WBInteraction000342001
WBInteraction000342288
WBInteraction000343165
WBInteraction000345828
WBInteraction000346731
WBInteraction000347240
WBInteraction000348773
WBInteraction000350024
WBInteraction000350608
WBInteraction000351568
WBInteraction000360415
WBInteraction000363358
WBInteraction000374611
WBInteraction000378631
WBInteraction000379197
WBInteraction000381076
WBInteraction000384799
WBInteraction000391354
WBInteraction000394611
WBInteraction000397016
WBInteraction000398960
WBInteraction000399373
WBInteraction000401247
WBInteraction000403451
WBInteraction000403857
WBInteraction000407001
WBInteraction000410561
WBInteraction000414921
WBInteraction000421238
WBInteraction000423311
WBInteraction000424099
WBInteraction000433893
WBInteraction000433918
WBInteraction000435481
WBInteraction000438517
WBInteraction000445925
WBInteraction000449666
WBInteraction000449818
WBInteraction000452191
WBInteraction000453230
WBInteraction000453368
WBInteraction000456048
WBInteraction000456605
WBInteraction000459748
WBInteraction000462119
WBInteraction000462928
WBInteraction000463199
WBInteraction000463200
WBInteraction000463225
WBInteraction000463785
WBInteraction000464440
WBInteraction000464525
WBInteraction000465591
WBInteraction000465719
WBInteraction000466056
WBInteraction000468149
WBInteraction000468168
WBInteraction000468229
WBInteraction000468256
WBInteraction000468274
WBInteraction000468630
WBInteraction000468657
WBInteraction000468658
WBInteraction000469445
WBInteraction000469527
WBInteraction000469673
WBInteraction000469706
WBInteraction000469707
WBInteraction000469997
WBInteraction000470103
WBInteraction000471145
WBInteraction000471840
WBInteraction000472917
WBInteraction000474107
WBInteraction000474343
WBInteraction000475154
WBInteraction000519532
WBInteraction000519541
WBInteraction000519591
WBInteraction000519592
WBInteraction000519597
WBInteraction000519600
WBInteraction000519601
WBInteraction000519603
WBInteraction000519605
WBInteraction000519607
WBInteraction000519610
WBInteraction000519611
WBInteraction000519612
WBInteraction000523319
WBInteraction000542091
WBInteraction000542550
WBInteraction000554389
WBInteraction000559219
WBInteraction000560486
WBInteraction000560522
WBInteraction000560805
WBInteraction000562667
WBInteraction000562946
WBInteraction000565899
WBInteraction000567005
WBInteraction000567039
WBInteraction000568702
WBInteraction000572257
WBInteraction000574702
WBInteraction000576022
WBInteraction000577765
WBInteraction000580374
WBInteraction000586184
WBProcessWBbiopr:00000120
Map_infoMapIIIPosition-1.18757Error0.003233
PositivePositive_cloneF23F12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027739
WBPaper00029221
WBPaper00035228
WBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00056008
WBPaper00056554
WBPaper00057217
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene