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WormBase Tree Display for Gene: WBGene00003774

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Name Class

WBGene00003774SMapS_parentSequenceF07F6
IdentityVersion1
NameCGC_namenmr-1Person_evidenceWBPerson404
Sequence_nameF07F6.6
Molecular_nameF07F6.6
F07F6.6.1
CE30128
Other_nameF56D1.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
F56D1.cCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_F07F6.6Accession_evidenceNDBBX284602
Public_namenmr-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnmr
Allele (99)
StrainWBStrain00040167
WBStrain00002755
WBStrain00040168
WBStrain00040666
WBStrain00040171
WBStrain00040796
WBStrain00054658
WBStrain00054659
RNASeq_FPKM (74)
GO_annotation (32)
OrthologWBGene00057363Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025460Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00153535Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00136216Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g7310Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9181Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g9183Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9047Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8388Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g8391Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14635Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23115Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g447Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3568Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2489Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g2490Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28455Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7148Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00127.g5101Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00967.g15151Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nmr-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11403Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00346.g9851Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06057Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006030Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09193Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18738Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20104800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4502Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00273974Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267681Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0010399Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-051202-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-051202-2Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:4584Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:95819Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:2736Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00001612Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001613Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001614Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001615Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001616Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001617Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001618Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001619Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003775Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012190Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnmr-1 encodes an NMDA-type ionotropic glutamate receptor subunit that affects the duration of forward movement which is important during foraging behavior, and also affects osmotic avoidance; the slow kinetics typical of NMDA-dependent currents are likely important for its effect on forward movement.Paper_evidenceWBPaper00004836
WBPaper00005622
Curator_confirmedWBPerson48
Date_last_updated04 Mar 2005 00:00:00
Automated_descriptionPredicted to enable ligand-gated monoatomic ion channel activity and signaling receptor activity. Predicted to contribute to NMDA glutamate receptor activity. Involved in locomotory behavior and regulation of forward locomotion. Located in neuron projection; plasma membrane; and synapse. Expressed in several structures, including ganglia; gonadal sheath cell; head mesodermal cell; nerve ring neurons; and oocyte. Used to study neurodegenerative disease. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; alcohol use disorder; autosomal dominant intellectual developmental disorder 8; and developmental and epileptic encephalopathy 101. Is an ortholog of human GRIN1 (glutamate ionotropic receptor NMDA type subunit 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:1289Homo sapiensPaper_evidenceWBPaper00057034
Curator_confirmedWBPerson324
Date_last_updated30 Mar 2021 00:00:00
Potential_modelDOID:10652Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
DOID:0070038Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
DOID:8725Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
DOID:0070387Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
DOID:3526Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
DOID:1574Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
DOID:11206Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4584)
Models_disease_assertedWBDOannot00000907
WBDOannot00000908
Molecular_infoCorresponding_CDSF07F6.6
Corresponding_transcriptF07F6.6.1
Other_sequenceOden_isotig22559
JI250035.1
Tcol_isotig18961
Associated_featureWBsf987884
WBsf987885
WBsf1012228
WBsf1012229
WBsf223054
Experimental_infoRNAi_resultWBRNAi00022320Inferred_automaticallyRNAi_primary
WBRNAi00043920Inferred_automaticallyRNAi_primary
WBRNAi00030612Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_construct (42)
Construct_productWBCnstr00000022
WBCnstr00006168
WBCnstr00010811
WBCnstr00011656
WBCnstr00013203
WBCnstr00035874
Microarray_results (19)
Expression_cluster (94)
Interaction (71)
Map_infoMapIIPosition-1.52008Error0.016815
PositivePositive_cloneF07F6Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4253
4538
5279
Pseudo_map_position
Reference (105)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene