WormBase Tree Display for Gene: WBGene00001619
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| WBGene00001619 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | glr-8 | Person_evidence | WBPerson42 | |||||
| Sequence_name | F22A3.3 | ||||||||
| Molecular_name | F22A3.3a | ||||||||
| F22A3.3a.1 | |||||||||
| CE27990 | |||||||||
| F22A3.3b | |||||||||
| CE52723 | |||||||||
| F22A3.3b.1 | |||||||||
| Other_name | CELE_F22A3.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | glr-8 | ||||||||
| DB_info | Database | AceView | gene | XH127 | |||||
| WormQTL | gene | WBGene00001619 | |||||||
| WormFlux | gene | WBGene00001619 | |||||||
| NDB | locus_tag | CELE_F22A3.3 | |||||||
| NCBI | gene | 180924 | |||||||
| RefSeq | protein | NM_001381010.2 | |||||||
| NM_001381009.1 | |||||||||
| TrEMBL | UniProtAcc | A0A3B1E9Z6 | |||||||
| Q19693 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3B1E9Z6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glr | ||||||||
| Allele (62) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003364 | ||||||||
| 00003365 | |||||||||
| 00003366 | |||||||||
| 00003367 | |||||||||
| 00003368 | |||||||||
| 00109155 | |||||||||
| 00109156 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00001612 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001613 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001614 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001615 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001616 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001617 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001618 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003774 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003775 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012190 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | glr-8 encodes a highly divergent putative ionotropic glutamate receptorsubunit, unclassifiable as NMDA or non-NMDA (though possibly of the Deltasubfamily), and without any clear close homologs in metazoa or plants;glr-8 is expressed in the pharyngeal nervous system, the body wallmechanoreceptors ALM and PLM, and two other neurons (BDU and URB); glr-8is expressed from embryogenesis to adulthood. | Paper_evidence | WBPaper00004529 | |||||
| WBPaper00004567 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 23 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable ionotropic glutamate receptor activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway and monoatomic ion transmembrane transport. Predicted to be located in plasma membrane. Expressed in head neurons and pharyngeal neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F22A3.3a | |||||||
| F22A3.3b | |||||||||
| Corresponding_transcript | F22A3.3a.1 | ||||||||
| F22A3.3b.1 | |||||||||
| Other_sequence | CJC03314_1 | ||||||||
| Associated_feature | WBsf662882 | ||||||||
| WBsf662883 | |||||||||
| WBsf662884 | |||||||||
| WBsf662885 | |||||||||
| WBsf235841 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013721 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031246 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045264 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr823 | ||||||||
| Expr15369 | |||||||||
| Expr1021371 | |||||||||
| Expr1149194 | |||||||||
| Expr2012119 | |||||||||
| Expr2030355 | |||||||||
| Drives_construct | WBCnstr00013196 | ||||||||
| WBCnstr00036820 | |||||||||
| Construct_product | WBCnstr00013196 | ||||||||
| WBCnstr00015865 | |||||||||
| WBCnstr00036820 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | X | Position | -2.879 | |||||
| Positive | Positive_clone | F22A3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004567 | ||||||||
| WBPaper00006187 | |||||||||
| WBPaper00016873 | |||||||||
| WBPaper00027274 | |||||||||
| WBPaper00034738 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
