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WormBase Tree Display for Gene: WBGene00001619

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Name Class

WBGene00001619SMapS_parentSequenceCHROMOSOME_X
IdentityVersion1
NameCGC_nameglr-8Person_evidenceWBPerson42
Sequence_nameF22A3.3
Molecular_nameF22A3.3a
F22A3.3a.1
CE27990
F22A3.3b
CE52723
F22A3.3b.1
Other_nameCELE_F22A3.3Accession_evidenceNDBBX284606
Public_nameglr-8
DB_infoDatabaseAceViewgeneXH127
WormQTLgeneWBGene00001619
WormFluxgeneWBGene00001619
NDBlocus_tagCELE_F22A3.3
NCBIgene180924
RefSeqproteinNM_001381010.2
NM_001381009.1
TrEMBLUniProtAccA0A3B1E9Z6
Q19693
UniProt_GCRPUniProtAccA0A3B1E9Z6
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classglr
Allele (62)
RNASeq_FPKM (74)
GO_annotation00003364
00003365
00003366
00003367
00003368
00109155
00109156
Ortholog (38)
ParalogWBGene00001612Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001613Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001614Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001615Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001616Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001617Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001618Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003774Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003775Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012190Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionglr-8 encodes a highly divergent putative ionotropic glutamate receptorsubunit, unclassifiable as NMDA or non-NMDA (though possibly of the Deltasubfamily), and without any clear close homologs in metazoa or plants;glr-8 is expressed in the pharyngeal nervous system, the body wallmechanoreceptors ALM and PLM, and two other neurons (BDU and URB); glr-8is expressed from embryogenesis to adulthood.Paper_evidenceWBPaper00004529
WBPaper00004567
Curator_confirmedWBPerson567
Date_last_updated23 Aug 2006 00:00:00
Automated_descriptionPredicted to enable ionotropic glutamate receptor activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway and monoatomic ion transmembrane transport. Predicted to be located in plasma membrane. Expressed in head neurons and pharyngeal neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF22A3.3a
F22A3.3b
Corresponding_transcriptF22A3.3a.1
F22A3.3b.1
Other_sequenceCJC03314_1
Associated_featureWBsf662882
WBsf662883
WBsf662884
WBsf662885
WBsf235841
Experimental_infoRNAi_resultWBRNAi00013721Inferred_automaticallyRNAi_primary
WBRNAi00031246Inferred_automaticallyRNAi_primary
WBRNAi00045264Inferred_automaticallyRNAi_primary
Expr_patternExpr823
Expr15369
Expr1021371
Expr1149194
Expr2012119
Expr2030355
Drives_constructWBCnstr00013196
WBCnstr00036820
Construct_productWBCnstr00013196
WBCnstr00015865
WBCnstr00036820
Microarray_results (21)
Expression_clusterWBPaper00032976:dosage_compensated_genes
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00040420:FLP_enriched
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00045974:NSM_enriched_totalRNA_tiling
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00053302:stavudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00056167:Cry5B_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:AIA
WBPaper00061340:ALM_PLM
WBPaper00061340:CEP
WBPaper00061340:IL2
WBPaper00061340:MC
WBPaper00061340:NSM_parent
WBPaper00061340:PLM
WBPaper00061340:RIH
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:sri-19-glr-8
WBPaper00061651:I6_enriched
WBPaper00061651:NSM_enriched
WBPaper00061651:PVD_enriched
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00065841:53_0
WBPaper00065841:55_0
WBPaper00065841:58_0
WBPaper00065841:58_1
WBPaper00065841:67_0
WBPaper00065841:70_0
WBPaper00065841:116_0
WBPaper00065841:125_0
WBPaper00065841:135_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00045673:colistin_upregulated
Interaction (23)
Map_infoMapXPosition-2.879
PositivePositive_cloneF22A3Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004567
WBPaper00006187
WBPaper00016873
WBPaper00027274
WBPaper00034738
WBPaper00055090
WBPaper00061331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene