WormBase Tree Display for Gene: WBGene00001617
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| WBGene00001617 | SMap | S_parent | Sequence | F41B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | glr-6 | Person_evidence | WBPerson42 | |||||
| Sequence_name | F41B4.4 | ||||||||
| Molecular_name | F41B4.4a | ||||||||
| F41B4.4a.1 | |||||||||
| CE35715 | |||||||||
| F41B4.4b | |||||||||
| CE30983 | |||||||||
| F41B4.4b.1 | |||||||||
| Other_name | CELE_F41B4.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | glr-6 | ||||||||
| DB_info | Database | AceView | gene | XH456 | |||||
| WormQTL | gene | WBGene00001617 | |||||||
| WormFlux | gene | WBGene00001617 | |||||||
| NDB | locus_tag | CELE_F41B4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001617|UniProtKB=Q8MXV8 | |||||||
| family | PTHR18966 | ||||||||
| NCBI | gene | 180955 | |||||||
| RefSeq | protein | NM_171712.5 | |||||||
| NM_001383601.1 | |||||||||
| TrEMBL | UniProtAcc | Q8MXV7 | |||||||
| Q8MXV8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q8MXV8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glr | ||||||||
| Allele (81) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Contained_in_operon | CEOPX084 | ||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00001612 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001613 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001614 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001615 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001616 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001618 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001619 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003774 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003775 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012190 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | glr-6 encodes a putative non-NMDA ionotropic glutamate receptor subunit,most closely related to GLR-5, possibly of the kainate subfamily; glr-6(along with glr-3) is expressed in only one cell type, the thermosensoryinterneuron RIA, from near hatching onward to adulthood. | Paper_evidence | WBPaper00004529 | |||||
| WBPaper00004567 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 23 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable glutamate receptor activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to be located in postsynaptic density membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F41B4.4a | |||||||
| F41B4.4b | |||||||||
| Corresponding_CDS_history | F41B4.4a:wp109 | ||||||||
| Corresponding_transcript | F41B4.4a.1 | ||||||||
| F41B4.4b.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf654092 | ||||||||
| WBsf655671 | |||||||||
| WBsf237524 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046941 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014715 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000351 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032069 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr821 | ||||||||
| Expr1027470 | |||||||||
| Expr1030971 | |||||||||
| Expr1150808 | |||||||||
| Expr2012117 | |||||||||
| Expr2030353 | |||||||||
| Drives_construct | WBCnstr00013184 | ||||||||
| WBCnstr00015690 | |||||||||
| WBCnstr00015692 | |||||||||
| WBCnstr00015693 | |||||||||
| WBCnstr00015694 | |||||||||
| WBCnstr00015696 | |||||||||
| WBCnstr00015697 | |||||||||
| WBCnstr00036821 | |||||||||
| Construct_product | WBCnstr00013184 | ||||||||
| WBCnstr00015867 | |||||||||
| WBCnstr00036821 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | X | Position | -2.34917 | Error | 0.00404 | |||
| Positive | Positive_clone | F41B4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Sequence connection from [Brockie PJ, Maricq AV, Aronoff R], 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
