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WormBase Tree Display for Gene: WBGene00001617

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Name Class

WBGene00001617SMapS_parentSequenceF41B4
IdentityVersion1
NameCGC_nameglr-6Person_evidenceWBPerson42
Sequence_nameF41B4.4
Molecular_nameF41B4.4a
F41B4.4a.1
CE35715
F41B4.4b
CE30983
F41B4.4b.1
Other_nameCELE_F41B4.4Accession_evidenceNDBBX284606
Public_nameglr-6
DB_infoDatabaseAceViewgeneXH456
WormQTLgeneWBGene00001617
WormFluxgeneWBGene00001617
NDBlocus_tagCELE_F41B4.4
PanthergeneCAEEL|WormBase=WBGene00001617|UniProtKB=Q8MXV8
familyPTHR18966
NCBIgene180955
RefSeqproteinNM_171712.5
NM_001383601.1
TrEMBLUniProtAccQ8MXV7
Q8MXV8
UniProt_GCRPUniProtAccQ8MXV8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classglr
Allele (81)
RNASeq_FPKM (74)
GO_annotation (20)
Contained_in_operonCEOPX084
Ortholog (31)
ParalogWBGene00001612Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001613Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001614Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001615Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001616Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001618Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001619Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003774Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003775Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012190Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionglr-6 encodes a putative non-NMDA ionotropic glutamate receptor subunit,most closely related to GLR-5, possibly of the kainate subfamily; glr-6(along with glr-3) is expressed in only one cell type, the thermosensoryinterneuron RIA, from near hatching onward to adulthood.Paper_evidenceWBPaper00004529
WBPaper00004567
Curator_confirmedWBPerson567
Date_last_updated23 Aug 2006 00:00:00
Automated_descriptionPredicted to enable glutamate receptor activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to be located in postsynaptic density membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF41B4.4a
F41B4.4b
Corresponding_CDS_historyF41B4.4a:wp109
Corresponding_transcriptF41B4.4a.1
F41B4.4b.1
Other_sequence (14)
Associated_featureWBsf654092
WBsf655671
WBsf237524
Experimental_infoRNAi_resultWBRNAi00046941Inferred_automaticallyRNAi_primary
WBRNAi00014715Inferred_automaticallyRNAi_primary
WBRNAi00000351Inferred_automaticallyRNAi_primary
WBRNAi00032069Inferred_automaticallyRNAi_primary
Expr_patternExpr821
Expr1027470
Expr1030971
Expr1150808
Expr2012117
Expr2030353
Drives_constructWBCnstr00013184
WBCnstr00015690
WBCnstr00015692
WBCnstr00015693
WBCnstr00015694
WBCnstr00015696
WBCnstr00015697
WBCnstr00036821
Construct_productWBCnstr00013184
WBCnstr00015867
WBCnstr00036821
Microarray_results (25)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_larva_enriched
WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050015:ifg-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053289:DREAM-target
WBPaper00053302:stavudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:male_enriched_siRNA
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059471:EGL-43_interacting
WBPaper00059537:ngn-1(ok2200)_downregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:B
WBPaper00061340:RIA
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:mlt-9_22518-F33D4.6_14044
WBPaper00061651:RIA_enriched
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00065158:AFD_enriched
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065841:83_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_23
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00031003:hlh_1_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00034661:AgNPs_downregulated
WBPaper00040985:AIN-2_asynchronous_muscle
WBPaper00041174:genotypic
WBPaper00041174:genotypic_prime
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
[cgc6390]:Cluster_B
Interaction (27)
Map_infoMapXPosition-2.34917Error0.00404
PositivePositive_cloneF41B4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (18)
RemarkSequence connection from [Brockie PJ, Maricq AV, Aronoff R], 02/06/11 krb.
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene