WormBase Tree Display for Gene: WBGene00001616
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| WBGene00001616 | SMap | S_parent | Sequence | ZC196 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | glr-5 | Person_evidence | WBPerson42 | |||||
| Sequence_name | ZC196.7 | ||||||||
| Molecular_name | ZC196.7 | ||||||||
| ZC196.7.1 | |||||||||
| CE15078 | |||||||||
| Other_name | CELE_ZC196.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | glr-5 | ||||||||
| DB_info | Database | AceView | gene | 5J199 | |||||
| WormQTL | gene | WBGene00001616 | |||||||
| WormFlux | gene | WBGene00001616 | |||||||
| NDB | locus_tag | CELE_ZC196.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001616|UniProtKB=O01623 | |||||||
| family | PTHR18966 | ||||||||
| NCBI | gene | 179251 | |||||||
| RefSeq | protein | NM_072843.6 | |||||||
| TrEMBL | UniProtAcc | O01623 | |||||||
| UniProt_GCRP | UniProtAcc | O01623 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glr | ||||||||
| Allele (63) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00001612 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001613 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001614 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001615 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001618 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001619 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001617 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003774 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003775 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012190 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | glr-5 encodes a kainate (non-NMDA)-type ionotropic glutamate receptor subunit; GLR-5 activity is required for normal brood sizes, especially at high temperatures; GLR-5 is expressed in neurons. | Paper_evidence | WBPaper00017029 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Sep 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable glutamate receptor activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to be located in postsynaptic density membrane. Expressed in VC neuron and nerve ring neurons. Is an ortholog of human GRIK4 (glutamate ionotropic receptor kainate type subunit 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC196.7 | |||||||
| Corresponding_transcript | ZC196.7.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf647016 | ||||||||
| WBsf1000735 | |||||||||
| WBsf1000736 | |||||||||
| WBsf1000737 | |||||||||
| WBsf1020077 | |||||||||
| WBsf1020078 | |||||||||
| WBsf232141 | |||||||||
| WBsf232142 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021600 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058776 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr820 | ||||||||
| Expr13966 | |||||||||
| Expr1027249 | |||||||||
| Expr1030970 | |||||||||
| Expr1162197 | |||||||||
| Expr2012116 | |||||||||
| Expr2030352 | |||||||||
| Drives_construct | WBCnstr00013175 | ||||||||
| WBCnstr00036822 | |||||||||
| WBCnstr00042862 | |||||||||
| Construct_product | WBCnstr00013175 | ||||||||
| WBCnstr00015604 | |||||||||
| WBCnstr00036822 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (197) | |||||||||
| Interaction | WBInteraction000049944 | ||||||||
| WBInteraction000227030 | |||||||||
| WBInteraction000398942 | |||||||||
| WBInteraction000424396 | |||||||||
| WBInteraction000431085 | |||||||||
| WBInteraction000463872 | |||||||||
| WBInteraction000471376 | |||||||||
| WBInteraction000525274 | |||||||||
| WBInteraction000556909 | |||||||||
| Map_info | Map | V | Position | 1.57786 | Error | 0.009162 | |||
| Positive | Positive_clone | ZC196 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4227 | |||||||
| 4356 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Sequence connection from [Brockie PJ, Maricq AV, Aronoff R], 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
