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WormBase Tree Display for Gene: WBGene00001619

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Name Class

WBGene00001619SMapS_parentSequenceCHROMOSOME_X
IdentityVersion1
NameCGC_nameglr-8Person_evidenceWBPerson42
Sequence_nameF22A3.3
Molecular_nameF22A3.3a
F22A3.3a.1
CE27990
F22A3.3b
CE52723
F22A3.3b.1
Other_nameCELE_F22A3.3Accession_evidenceNDBBX284606
Public_nameglr-8
DB_infoDatabaseAceViewgeneXH127
WormQTLgeneWBGene00001619
WormFluxgeneWBGene00001619
NDBlocus_tagCELE_F22A3.3
NCBIgene180924
RefSeqproteinNM_001381010.2
NM_001381009.1
TrEMBLUniProtAccA0A3B1E9Z6
Q19693
UniProt_GCRPUniProtAccA0A3B1E9Z6
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classglr
Allele (62)
RNASeq_FPKM (74)
GO_annotation00003364
00003365
00003366
00003367
00003368
00109155
00109156
OrthologWBGene00051487Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00027625Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00142369Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00100071Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00130800Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00163883Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143516Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00125601Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00128536Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00051426Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00062034Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00106011Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g2639Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12113Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6783Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17447Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2697Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26500Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g281Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19019Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g29023Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g15707Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00071.g3381Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_06476.g20289Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-glr-8Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold626.g6422Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00292.g8817Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00338Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024600Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00671Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17020Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0189800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19254Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00110269Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00206111Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00265754Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290326Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0259188Drosophila melanogasterFrom_analysisOMA
Panther
ParalogWBGene00001612Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001613Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001614Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001615Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001616Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001617Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001618Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003774Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003775Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012190Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionglr-8 encodes a highly divergent putative ionotropic glutamate receptorsubunit, unclassifiable as NMDA or non-NMDA (though possibly of the Deltasubfamily), and without any clear close homologs in metazoa or plants;glr-8 is expressed in the pharyngeal nervous system, the body wallmechanoreceptors ALM and PLM, and two other neurons (BDU and URB); glr-8is expressed from embryogenesis to adulthood.Paper_evidenceWBPaper00004529
WBPaper00004567
Curator_confirmedWBPerson567
Date_last_updated23 Aug 2006 00:00:00
Automated_descriptionPredicted to enable ionotropic glutamate receptor activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway and monoatomic ion transmembrane transport. Predicted to be located in plasma membrane. Expressed in head neurons and pharyngeal neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF22A3.3a
F22A3.3b
Corresponding_transcriptF22A3.3a.1
F22A3.3b.1
Other_sequenceCJC03314_1
Associated_featureWBsf662882
WBsf662883
WBsf662884
WBsf662885
WBsf235841
Experimental_infoRNAi_resultWBRNAi00013721Inferred_automaticallyRNAi_primary
WBRNAi00031246Inferred_automaticallyRNAi_primary
WBRNAi00045264Inferred_automaticallyRNAi_primary
Expr_patternExpr823
Expr15369
Expr1021371
Expr1149194
Expr2012119
Expr2030355
Drives_constructWBCnstr00013196
WBCnstr00036820
Construct_productWBCnstr00013196
WBCnstr00015865
WBCnstr00036820
Microarray_results (21)
Expression_cluster (82)
Interaction (23)
Map_infoMapXPosition-2.879
PositivePositive_cloneF22A3Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004567
WBPaper00006187
WBPaper00016873
WBPaper00027274
WBPaper00034738
WBPaper00055090
WBPaper00061331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene