WormBase Tree Display for Gene: WBGene00025460

WBGene00025460 SMap: S_parent: Sequence: cb25.fpc0058
  Identity: Version: 2
    Name: CGC_name: Cbr-nmr-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG02401
      Molecular_name: CBG02401
        CBG02401.1
        CBP00779
      Other_name: CBG_02401 Accession_evidence: NDB HE601438
      Public_name: Cbr-nmr-1
    DB_info: Database: NDB locus_tag CBG_02401
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:55 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-nmr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nmr
    Allele: WBVar00107328
    RNASeq_FPKM: WBls:0000002 0.305102 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.528777 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.549604 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.814933 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.179276 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.416939 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.457022 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.030315 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.06063 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.02021 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0.09738 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.106713 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.116046 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.053791 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.055529 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 0.033009 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.157154 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0.466194 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.20842 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.566211 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.593463 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.975267 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.828389 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.441513 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.456336 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.566102 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.690691 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.69314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.024231 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.058008 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.094687 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.131365 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.140639 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.34895 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.220585 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.240157 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.35087 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.410089 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.043414 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.082014 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.135056 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.041007 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.066068 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.17934 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.135056 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.498991 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.146105 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.437397 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00128869
      00128870
      00128871
      00128872
      00128873
    Ortholog (31)
    Paralog (11)
    Structured_description: Automated_description: Predicted to enable ligand-gated monoatomic ion channel activity and signaling receptor activity. Predicted to be involved in monoatomic ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans nmr-1. In C. elegans, nmr-1 is involved in locomotory behavior and regulation of forward locomotion. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG02401
    Corresponding_CDS_history: CBG02401:bp194
      CBG02401:bp255
    Corresponding_transcript: CBG02401.1
    Other_sequence: Oden_isotig22559
      JI250035.1
      Tcol_isotig18961
  Experimental_info: Expr_pattern: Expr1055153
    Microarray_results: GPL8303_CB6_WBGene00025460_A
      GPL8303_CB6_WBGene00025460_B
      GPL14143_CBG02401_674-733_0.747_83_B
      GPL14143_CBG02401_2439-2498_0.774_36_C
      GPL14143_CBG02401_2606-2665_0.810_1_A
  Method: Gene