WormBase Tree Display for Gene: WBGene00003729
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WBGene00003729 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nhx-1 | |||||||
Sequence_name | B0395.1 | ||||||||
Molecular_name | B0395.1 | ||||||||
B0395.1.1 | |||||||||
CE43178 | |||||||||
B0395.1.2 | |||||||||
Other_name | CELE_B0395.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | nhx-1 | ||||||||
DB_info | Database | AceView | gene | XQ635 | |||||
WormQTL | gene | WBGene00003729 | |||||||
WormFlux | gene | WBGene00003729 | |||||||
NDB | locus_tag | CELE_B0395.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003729|UniProtKB=G5EDH8 | |||||||
family | PTHR10110 | ||||||||
NCBI | gene | 181680 | |||||||
RefSeq | protein | NM_078221.8 | |||||||
TREEFAM | TREEFAM_ID | TF317212 | |||||||
TrEMBL | UniProtAcc | G5EDH8 | |||||||
UniProt_GCRP | UniProtAcc | G5EDH8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhx | ||||||||
Allele (72) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Ortholog (47) | |||||||||
Paralog | WBGene00003736 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00003733 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00003735 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00003731 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003943 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003730 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003734 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003732 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells; NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. | Paper_evidence | WBPaper00004651 | |||||
WBPaper00005421 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to be located in plasma membrane. Expressed in AIYL; AIYR; hypodermis; intestine; and muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0395.1 | |||||||
Corresponding_CDS_history | B0395.1:wp80 | ||||||||
B0395.1:wp196 | |||||||||
Corresponding_transcript | B0395.1.1 | ||||||||
B0395.1.2 | |||||||||
Other_sequence (17) | |||||||||
Associated_feature | WBsf648838 | ||||||||
WBsf648839 | |||||||||
WBsf663673 | |||||||||
WBsf236825 | |||||||||
Experimental_info | RNAi_result | WBRNAi00039018 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024396 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024397 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027146 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009746 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001533 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2232 | ||||||||
Expr2240 | |||||||||
Expr10075 | |||||||||
Expr1015368 | |||||||||
Expr1031741 | |||||||||
Expr1143180 | |||||||||
Expr2014253 | |||||||||
Expr2032493 | |||||||||
Drives_construct | WBCnstr00010711 | ||||||||
WBCnstr00010720 | |||||||||
WBCnstr00015047 | |||||||||
WBCnstr00035912 | |||||||||
Construct_product | WBCnstr00010720 | ||||||||
WBCnstr00035912 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (3) | |||||||||
Map_info | Map | X | Position | 23.335 | Error | 0.165455 | |||
Positive | Positive_clone | B0395 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005421 | ||||||||
WBPaper00018859 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Sequence connection from [Nehrke K, Melvin J] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |