WormBase Tree Display for Gene: WBGene00003729

WBGene00003729 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: nhx-1
      Sequence_name: B0395.1
      Molecular_name: B0395.1
        B0395.1.1
        CE43178
        B0395.1.2
      Other_name: CELE_B0395.1 Accession_evidence: NDB BX284606
      Public_name: nhx-1
    DB_info: Database: AceView gene XQ635
        WormQTL gene WBGene00003729
        WormFlux gene WBGene00003729
        NDB locus_tag CELE_B0395.1
        Panther gene CAEEL|WormBase=WBGene00003729|UniProtKB=G5EDH8
          family PTHR10110
        NCBI gene 181680
        RefSeq protein NM_078221.8
        TREEFAM TREEFAM_ID TF317212
        TrEMBL UniProtAcc G5EDH8
        UniProt_GCRP UniProtAcc G5EDH8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhx
    Allele: WBVar01219035
      WBVar00528021
      WBVar00310501
      WBVar01219036
      WBVar01219037
      WBVar00528022
      WBVar01219038
      WBVar00528023
      WBVar01499519
      WBVar01219039
      WBVar00528024
      WBVar01219040
      WBVar00528025
      WBVar00528026
      WBVar01219041
      WBVar00528027
      WBVar01219042
      WBVar01219043
      WBVar00528028
      WBVar00528029
      WBVar01219044
      WBVar01499710
      WBVar01219045
      WBVar00528030
      WBVar01219046
      WBVar00528031
      WBVar00528032
      WBVar01219047
      WBVar00528033
      WBVar01219048
      WBVar01219049
      WBVar01219050
      WBVar00087183
      WBVar01219051
      WBVar01219052
      WBVar00087184
      WBVar00087185
      WBVar00087186
      WBVar00087187
      WBVar02112349
      WBVar01499562
      WBVar01498826
      WBVar01498827
      WBVar01679935
      WBVar00249772
      WBVar02151910
      WBVar01545291
      WBVar01545292
      WBVar01545293
      WBVar01545294
      WBVar01760951
      WBVar01760952
      WBVar01760953
      WBVar01914339
      WBVar01219022
      WBVar01554038
      WBVar01219023
      WBVar01554039
      WBVar01219024
      WBVar01554040
      WBVar01219025
      WBVar01219026
      WBVar01219027
      WBVar01219028
      WBVar01219029
      WBVar01219030
      WBVar01219031
      WBVar01498960
      WBVar01219032
      WBVar01219033
      WBVar01500067
      WBVar01219034
    RNASeq_FPKM (74)
    GO_annotation (18)
    Ortholog (47)
    Paralog: WBGene00003736 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003733 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003735 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003731 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003943 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003730 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003734 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003732 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells; NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. Paper_evidence: WBPaper00004651
            WBPaper00005421
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to be located in plasma membrane. Expressed in AIYL; AIYR; hypodermis; intestine; and muscle cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0395.1
    Corresponding_CDS_history: B0395.1:wp80
      B0395.1:wp196
    Corresponding_transcript: B0395.1.1
      B0395.1.2
    Other_sequence (17)
    Associated_feature: WBsf648838
      WBsf648839
      WBsf663673
      WBsf236825
  Experimental_info: RNAi_result: WBRNAi00039018 Inferred_automatically: RNAi_primary
      WBRNAi00024396 Inferred_automatically: RNAi_primary
      WBRNAi00024397 Inferred_automatically: RNAi_primary
      WBRNAi00027146 Inferred_automatically: RNAi_primary
      WBRNAi00009746 Inferred_automatically: RNAi_primary
      WBRNAi00001533 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2232
      Expr2240
      Expr10075
      Expr1015368
      Expr1031741
      Expr1143180
      Expr2014253
      Expr2032493
    Drives_construct: WBCnstr00010711
      WBCnstr00010720
      WBCnstr00015047
      WBCnstr00035912
    Construct_product: WBCnstr00010720
      WBCnstr00035912
    Microarray_results (19)
    Expression_cluster (110)
    Interaction (3)
  Map_info: Map: X Position: 23.335 Error: 0.165455
    Positive: Positive_clone: B0395 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005421
    WBPaper00018859
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection from [Nehrke K, Melvin J]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene