WormBase Tree Display for Gene: WBGene00003095

WBGene00003095 SMap: S_parent: Sequence: F58B3
  Identity: Version: 1
    Name: CGC_name: lys-6 Person_evidence: WBPerson168
      Sequence_name: F58B3.3
      Molecular_name: F58B3.3
        F58B3.3.1
        CE06005
      Other_name: CELE_F58B3.3 Accession_evidence: NDB BX284604
      Public_name: lys-6
    DB_info: Database: AceView gene 4M392
        WormQTL gene WBGene00003095
        WormFlux gene WBGene00003095
        NDB locus_tag CELE_F58B3.3
        Panther gene CAEEL|WormBase=WBGene00003095|UniProtKB=Q20968
          family PTHR23208
        NCBI gene 178087
        RefSeq protein NM_069793.7
        TREEFAM TREEFAM_ID TF316378
        TrEMBL UniProtAcc Q20968
        UniProt_GCRP UniProtAcc Q20968
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lys
    Allele (12)
    Strain: WBStrain00036775
      WBStrain00051088
    RNASeq_FPKM (74)
    GO_annotation: 00069804
      00069805
      00069806
      00110575
      00110576
      00110577
    Ortholog (41)
    Paralog: WBGene00003090 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003091 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003092 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003093 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003094 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003096 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003099 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003097 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003098 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lysozyme activity. Predicted to be involved in innate immune response and signal transduction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F58B3.3
    Corresponding_transcript: F58B3.3.1
    Other_sequence: AS02733
      AS09531
      Acan_isotig12182
      CJC01629_1
      AS02604
      AS00442
      ASC06199
      BQ381309.1
      FE915669.1
      BQ381388.1
      FD516235.1
      FE916579.1
      CSC00932_1
      FE916396.1
      FC818366.1
      AS02799
      GW409018.1
      ES411870.1
      ES880251.1
      BU586602.1
      DV019529.1
      ES880312.1
      ASC32757_1
      TCC02172_1
      AS09371
      FC816356.1
      ASC05590_1
      FE916420.1
      Oden_isotig22195
      FE915304.1
      CSC00353_1
      FD514617.1
      FD515349.1
      AS01420
      FE915601.1
      FE916214.1
      AS01379
      ASC27930_1
      FD517023.1
      DV019092.1
      FE916286.1
      TLC00167_1
      Oden_isotig18097
      AS02097
      BQ381423.1
      AS02832
      FE915261.1
      DV019556.1
      DV019668.1
      PT01745
      DV019558.1
      BQ381263.1
      Oden_isotig21463
      JO474316.1
      SR00871
      FE916062.1
      AS09342
      DV019516.1
      BQ381216.1
      Tcir_isotig15500
      AS01702
      DV019255.1
      FE915482.1
      ASC35761_1
      FE916165.1
      CJC08935_1
      PPC03770_1
      PTC00546_1
      FE915631.1
      DV019324.1
      FE915602.1
      CGC01196_1
      DV019030.1
      EX007168.1
      ALC00548_1
      Oden_isotig22033
      JI180364.1
      HO243975.1
      PPC00419_1
      TX00242
      FE916346.1
      AS00441
      FE916160.1
      DV019481.1
      PT01556
      JI180169.1
      FE915859.1
      EC278299.1
      FE916311.1
      FE916112.1
      BQ381409.1
      FE916684.1
      PP01471
      BQ381424.1
      DV019768.1
    Associated_feature: WBsf230901
    Gene_product_binds: WBsf034246
      WBsf034251
      WBsf034331
      WBsf034332
  Experimental_info: RNAi_result: WBRNAi00092215 Inferred_automatically: RNAi_primary
      WBRNAi00033072 Inferred_automatically: RNAi_primary
      WBRNAi00092216 Inferred_automatically: RNAi_primary
      WBRNAi00048949 Inferred_automatically: RNAi_primary
      WBRNAi00048948 Inferred_automatically: RNAi_primary
      WBRNAi00075955 Inferred_automatically: RNAi_primary
      WBRNAi00015942 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1031465
      Expr1152686
      Expr2013317
      Expr2031548
    Drives_construct: WBCnstr00036233
    Construct_product: WBCnstr00014600
      WBCnstr00036233
    Microarray_results (12)
    Expression_cluster (254)
    Interaction (131)
  Map_info: Map: IV Position: 5.08626 Error: 0.003219
    Positive: Positive_clone: F58B3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005382
    WBPaper00006437
    WBPaper00024209
    WBPaper00031802
    WBPaper00065988
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene