WormBase Tree Display for Gene: WBGene00003093

WBGene00003093 SMap: S_parent: Sequence: F58B3
  Identity: Version: 1
    Name: CGC_name: lys-4 Person_evidence: WBPerson168
      Sequence_name: F58B3.1
      Molecular_name: F58B3.1
        F58B3.1.1
        CE06003
      Other_name: CELE_F58B3.1 Accession_evidence: NDB BX284604
      Public_name: lys-4
    DB_info: Database: AceView gene 4M386
        WormQTL gene WBGene00003093
        WormFlux gene WBGene00003093
        NDB locus_tag CELE_F58B3.1
        Panther gene CAEEL|WormBase=WBGene00003093|UniProtKB=Q20964
          family PTHR23208
        NCBI gene 178086
        RefSeq protein NM_069791.9
        TREEFAM TREEFAM_ID TF316378
        TrEMBL UniProtAcc Q20964
        UniProt_GCRP UniProtAcc Q20964
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lys
    Allele (34)
    Strain (2)
    RNASeq_FPKM (74)
    GO_annotation: 00069770
      00069771
      00069772
      00069773
      00110569
      00110570
      00110571
    Ortholog (46)
    Paralog: WBGene00003090 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003091 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003092 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003096 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003099 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003095 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003094 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003098 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003097 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lysozyme activity. Involved in defense response to Gram-positive bacterium. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F58B3.1
    Corresponding_transcript: F58B3.1.1
    Other_sequence (25)
    Associated_feature: WBsf652233
      WBsf668351
      WBsf718198
      WBsf997893
      WBsf230899
  Experimental_info: RNAi_result: WBRNAi00075954 Inferred_automatically: RNAi_primary
      WBRNAi00033070 Inferred_automatically: RNAi_primary
      WBRNAi00048947 Inferred_automatically: RNAi_primary
      WBRNAi00015941 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram582
      Expr1025658
      Expr1152684
      Expr2013315
      Expr2031546
    Drives_construct: WBCnstr00002718
      WBCnstr00036235
    Construct_product: WBCnstr00036235
    Microarray_results (21)
    Expression_cluster (414)
    Interaction: WBInteraction000120310
      WBInteraction000121120
      WBInteraction000144071
      WBInteraction000147169
      WBInteraction000156797
      WBInteraction000157641
      WBInteraction000160976
      WBInteraction000161935
      WBInteraction000187293
      WBInteraction000189663
      WBInteraction000189726
      WBInteraction000194343
      WBInteraction000194900
      WBInteraction000196644
      WBInteraction000207167
      WBInteraction000209477
      WBInteraction000210501
      WBInteraction000220899
      WBInteraction000222190
      WBInteraction000222948
      WBInteraction000226171
      WBInteraction000227334
      WBInteraction000234090
      WBInteraction000237033
      WBInteraction000237306
      WBInteraction000255617
      WBInteraction000279522
      WBInteraction000282711
      WBInteraction000282721
      WBInteraction000293442
      WBInteraction000295684
      WBInteraction000319186
      WBInteraction000319714
      WBInteraction000324143
      WBInteraction000331462
      WBInteraction000335441
      WBInteraction000335453
      WBInteraction000337860
      WBInteraction000338717
      WBInteraction000342117
      WBInteraction000342416
      WBInteraction000343704
      WBInteraction000345878
      WBInteraction000350254
      WBInteraction000356770
      WBInteraction000357174
      WBInteraction000357435
      WBInteraction000363897
      WBInteraction000365070
      WBInteraction000365270
      WBInteraction000367472
      WBInteraction000369197
      WBInteraction000369379
      WBInteraction000370160
      WBInteraction000370592
      WBInteraction000371310
      WBInteraction000371924
      WBInteraction000372253
      WBInteraction000374181
      WBInteraction000374316
      WBInteraction000378170
      WBInteraction000380818
      WBInteraction000382176
      WBInteraction000383513
      WBInteraction000385666
      WBInteraction000388685
      WBInteraction000388910
      WBInteraction000389253
      WBInteraction000393291
      WBInteraction000393526
      WBInteraction000396261
      WBInteraction000397609
      WBInteraction000397814
      WBInteraction000403828
      WBInteraction000405817
      WBInteraction000407156
      WBInteraction000408754
      WBInteraction000410197
      WBInteraction000410336
      WBInteraction000411526
      WBInteraction000412913
      WBInteraction000413706
      WBInteraction000414629
      WBInteraction000415743
      WBInteraction000420078
      WBInteraction000421124
      WBInteraction000421459
      WBInteraction000425203
      WBInteraction000426689
      WBInteraction000429145
      WBInteraction000429212
      WBInteraction000434267
      WBInteraction000434821
      WBInteraction000440196
      WBInteraction000444480
      WBInteraction000446550
      WBInteraction000447446
      WBInteraction000449582
      WBInteraction000451865
      WBInteraction000452054
      WBInteraction000454684
      WBInteraction000456503
      WBInteraction000462658
      WBInteraction000505014
      WBInteraction000540473
      WBInteraction000553196
      WBInteraction000560907
      WBInteraction000561958
  Map_info: Map: IV Position: 5.07601
    Positive: Positive_clone: F58B3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005382
    WBPaper00006437
    WBPaper00024209
    WBPaper00031802
    WBPaper00034591
    WBPaper00039111
    WBPaper00040135
    WBPaper00065026
    WBPaper00065988
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods.
  Method: Gene