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WormBase Tree Display for Gene: WBGene00003091

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Name Class

WBGene00003091SMapS_parentSequenceY22F5A
IdentityVersion1
NameCGC_namelys-2Person_evidenceWBPerson168
Sequence_nameY22F5A.5
Molecular_nameY22F5A.5
Y22F5A.5.1
CE16606
Other_nameCELE_Y22F5A.5Accession_evidenceNDBBX284605
Public_namelys-2
DB_infoDatabaseAceViewgene5K760
WormQTLgeneWBGene00003091
WormFluxgeneWBGene00003091
NDBlocus_tagCELE_Y22F5A.5
PanthergeneCAEEL|WormBase=WBGene00003091|UniProtKB=O62416
familyPTHR23208
NCBIgene179429
RefSeqproteinNM_073242.7
SwissProtUniProtAccO62416
TREEFAMTREEFAM_IDTF316378
UniProt_GCRPUniProtAccO62416
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlys
Allele (19)
RNASeq_FPKM (74)
GO_annotation (11)
OrthologWBGene00031134Caenorhabditis briggsaePerson_evidenceWBPerson2531
WBPerson168
From_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00045446Caenorhabditis remaneiPerson_evidenceWBPerson168
WBPerson2531
From_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155138Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00119871Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00123659Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00126443Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WBGene00222536Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1941Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g16419Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g3370Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4393Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18034Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1568Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g1569Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2359Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g24873Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13424Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g2259Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g19506Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold516.g2695Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00137.g5349Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00201.g6918Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22370Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017562Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09150Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10963Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12558Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12562Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_50285010Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15475Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247043Onchocerca volvulusFrom_analysisWormBase-Compara
ParalogWBGene00003090Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00003096Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00003093Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003099Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003092Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003094Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003095Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003098Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003097Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionlys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function.Paper_evidenceWBPaper00005382
Curator_confirmedWBPerson324
Date_last_updated23 Sep 2004 00:00:00
Automated_descriptionPredicted to enable lysozyme activity. Involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY22F5A.5
Corresponding_transcriptY22F5A.5.1
Other_sequence (135)
Associated_featureWBsf034362
WBsf652976
WBsf652977
WBsf652978
WBsf234363
Experimental_infoRNAi_resultWBRNAi00094558Inferred_automaticallyRNAi_primary
WBRNAi00075995Inferred_automaticallyRNAi_primary
WBRNAi00036714Inferred_automaticallyRNAi_primary
WBRNAi00095408Inferred_automaticallyRNAi_primary
WBRNAi00055692Inferred_automaticallyRNAi_primary
WBRNAi00110089Inferred_automaticallyRNAi_primary
WBRNAi00020123Inferred_automaticallyRNAi_primary
WBRNAi00095419Inferred_automaticallyRNAi_primary
Expr_patternExpr1013427
Expr1159218
Expr2013313
Expr2031544
Drives_constructWBCnstr00009963
WBCnstr00036237
Construct_productWBCnstr00009963
WBCnstr00036237
Microarray_results (18)
Expression_cluster (389)
Interaction (99)
WBProcessWBbiopr:00000039
WBbiopr:00000092
Map_info (3)
Reference (24)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene