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WormBase Tree Display for Gene: WBGene00001795

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Name Class

WBGene00001795EvidenceCGC_data_submission
SMapS_parentSequenceC05C12
IdentityVersion1
NameCGC_namegtl-1Person_evidenceWBPerson51
Sequence_nameC05C12.3
Molecular_nameC05C12.3
C05C12.3.1
CE33754
Other_nametag-33CGC_data_submission
CELE_C05C12.3Accession_evidenceNDBBX284604
Public_namegtl-1
DB_infoDatabaseAceViewgene4M14
WormQTLgeneWBGene00001795
WormFluxgeneWBGene00001795
NDBlocus_tagCELE_C05C12.3
PanthergeneCAEEL|WormBase=WBGene00001795|UniProtKB=G5ECM4
familyPTHR13800
NCBIgene178031
RefSeqproteinNM_069710.6
TrEMBLUniProtAccG5ECM4
UniProt_GCRPUniProtAccG5ECM4
OMIMgene603576
605692
608961
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtl
Allele (118)
StrainWBStrain00003262
WBStrain00035612
RNASeq_FPKM (74)
GO_annotation00012064
00012065
00012066
00012067
00012068
00012069
OrthologWBGene00062550Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00028384Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00033459Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00134037Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00194598Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00095969Pristionchus pacificusFrom_analysisOMA
WBGene00192063Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g11306Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2208Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15732Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g22118Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19685Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15678Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1098Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3687Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g3689Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g22886Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28107Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g6261Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g109Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g110Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00331.g9316Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_04442.g18853Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08049.g21255Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10533.g22704Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-gtl-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8058Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02837.g28077Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_014076Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02824Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_40316910Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11806Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIV_pilon.g11808Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00209191Caenorhabditis japonicaFrom_analysisWormBase-Compara
FB:FBgn0265194Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-021115-2Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-060531-95Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-070424-31Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
HGNC:7146Homo sapiensFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
HGNC:17994Homo sapiensFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
HGNC:17992Homo sapiensFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
MGI:1330305Mus musculusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
MGI:1929996Mus musculusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
MGI:2443101Mus musculusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
RGD:1304888Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
RGD:620053Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ParalogWBGene00001651Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001796Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000425Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004149Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008731Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020972Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021404Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021408Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptiongtl-1 encodes a TRPM subfamily member of the TRP channel family that affects the periodicity of the defecation cycle in combination with gon-2; expression includes the intestine.Paper_evidenceWBPaper00005092
WBPaper00011328
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable monoatomic cation channel activity. Involved in defecation. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110867Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7146)
DOID:0050534Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7146)
DOID:0111246Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17994)
DOID:83Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17992)
Molecular_infoCorresponding_CDSC05C12.3
Corresponding_CDS_historyC05C12.3:wp99
Corresponding_transcriptC05C12.3.1
Other_sequenceFK807706.1
MHC01321_1
MH01590
Dviv_isotig25122
FM207828.1
Associated_featureWBsf668304
WBsf1018190
WBsf230849
Experimental_infoRNAi_resultWBRNAi00010181Inferred_automaticallyRNAi_primary
WBRNAi00039701Inferred_automaticallyRNAi_primary
WBRNAi00001394Inferred_automaticallyRNAi_primary
WBRNAi00001519Inferred_automaticallyRNAi_primary
Expr_patternChronogram1622
Expr3713
Expr5160
Expr8230
Expr8232
Expr1017897
Expr1031057
Expr1143801
Expr2012342
Expr2030579
Drives_constructWBCnstr00003737
WBCnstr00007204
WBCnstr00007207
WBCnstr00007208
WBCnstr00007209
WBCnstr00011622
WBCnstr00013197
WBCnstr00021190
WBCnstr00036678
Construct_productWBCnstr00011622
WBCnstr00013197
WBCnstr00036678
Microarray_results (18)
Expression_cluster (177)
Interaction (18)
Map_infoMapIVPosition4.92955Error0.001473
PositivePositive_cloneC05C12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4386
4526
Pseudo_map_position
Reference (29)
RemarkSequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1]
Gene name created from parsing 'genotype' field from CGC strain informationCGC_data_submission
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene