WormBase Tree Display for Gene: WBGene00109058

WBGene00109058 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 6
    Name: CGC_name: Ppa-lam-3 From_analysis: Inferred_from_orthology
      Sequence_name: PPA19504
      Molecular_name: PPA19504
        PPA19504.1
        PP51091
      Other_name: GENEPREDICTION_SNAP300000076144
        UMM-S13-67.0 Person_evidence: WBPerson606
      Public_name: Ppa-lam-3
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 08 May 2019 10:09:22 WBPerson1983 Name_change: CGC_name: Ppa-lam-3
        3 01 Oct 2019 10:47:49 WBPerson1983 Name_change: CGC_name: Removed
        4 27 Nov 2019 12:48:14 WBPerson1983 Name_change: CGC_name: Ppa-lam-3
        5 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:27 WBPerson1983 Name_change: CGC_name: Ppa-lam-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lam
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.876023 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        2.62807 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Ortholog: WBGene00074550 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00190323 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00042473 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00226169 Brugia malayi From_analysis: WormBase-Compara
      WBGene00002248 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00120303 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00237056 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g10499 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7624 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17045 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14787 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2997 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16126 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5381 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18660 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g23963 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15140 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00531.g11908 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00682.g13407 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_10416.g22642 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lam-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold501.g2322 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00385.g10516 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05182 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002421 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06973 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g18538 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10280210 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00059905 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g2089 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00261083 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00295250 Trichuris muris From_analysis: WormBase-Compara
      WBGene00299237 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00095695 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00098403 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00099475 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00104946 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00113122 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00276112 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Laminin IV; Laminin-type EGF domain; Concanavalin A-like lectin/glucanase domain superfamily; EGF-like domain; Laminin EGF domain; Laminin G domain; and Laminin B (Domain IV). Is an ortholog of C. elegans lam-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA19504
    Corresponding_transcript: PPA19504.1
    Other_sequence: BM01069
      Acan_isotig17422
      Oden_isotig20678
      Dviv_isotig02698
      JI253484.1
      MJ01822
      SR04635
      Dviv_isotig32858
      Dviv_isotig02699
      GP00941
      JI169098.1
      JI163853.1
      Tcir_isotig13435
  Experimental_info: Microarray_results: GPL14372_Probes_19203
      GPL14372_Probes_19205
      GPL14372_Probes_19206
      GPL14372_Probes_19207
  Remark: [191001 pad] The CGC name Ppa-lam-3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-lam-3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene