WormBase Tree Display for Gene: WBGene00113122
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| WBGene00113122 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Identity | Version | 11 | ||||
| Name | CGC_name | Ppa-unc-6 | From_analysis | Inferred_from_orthology | ||
| Sequence_name | PPA23568 | |||||
| Molecular_name | PPA23568 | |||||
| PPA23568.1 | ||||||
| PP57265 | ||||||
| Other_name | GENEPREDICTION_SNAP300000080463 | |||||
| GENEPREDICTION_SNAP300000080464 | ||||||
| GENEPREDICTION_SNAP300000080465 | ||||||
| UMA-S344-3.38 | Person_evidence | WBPerson606 | ||||
| Public_name | Ppa-unc-6 | |||||
| Species | Pristionchus pacificus | |||||
| History | Version_change (11) | |||||
| Acquires_merge | WBGene00113123 | |||||
| WBGene00113124 | ||||||
| WBGene00203257 | ||||||
| Status | Live | |||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | unc | |||||
| RNASeq_FPKM | WBls:0000032 | 1.21582 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
| RNASeq.pristionchus.WBls:0000032.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
| WBls:0000101 | 0.883883 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
| 1.21582 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
| 1.43583 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
| RNASeq.pristionchus.WBls:0000101.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
| Ortholog (32) | ||||||
| Paralog | WBGene00095695 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
| WBGene00098403 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00099475 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00104946 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00109058 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00276112 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: WW domain; Laminin, N-terminal; UNC-6/NTR/C345C module; Laminin-type EGF domain; Tissue inhibitor of metalloproteinases-like, OB-fold; Netrin module, non-TIMP type; Laminin EGF domain; Laminin N-terminal (Domain VI); and WW domain superfamily. Is an ortholog of C. elegans unc-6. In C. elegans, unc-6 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | PPA23568 | ||||
| Corresponding_transcript | PPA23568.1 | |||||
| Other_sequence (18) | ||||||
| Experimental_info | Microarray_results (12) | |||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | |||||
| Remark | [190208 pad] The CGC name Ppa-unc-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
| [200204 pad] The CGC name Ppa-unc-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| [210528 pad] The CGC name Ppa-unc-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| Method | Gene |
