Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00104946

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00104946SMapS_parentSequencePPA_ChrIII
IdentityVersion3
NameCGC_namePpa-epi-1Inferred_automaticallyfrom gene merge
Sequence_namePPA15392
Molecular_namePPA15392
PPA15392.1
PP74841
Other_nameGENEPREDICTION_SNAP300000075088
GENEPREDICTION_SNAP300000075089
UMM-S66-11.9Person_evidenceWBPerson606
Public_namePpa-epi-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-epi-1
324 Nov 2017 09:46:50WBPerson4055EventAcquires_mergeWBGene00104947
Acquires_mergeWBGene00104947
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classepi
RNASeq_FPKMWBls:00000323.87099From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001012.34522From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
3.16467From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00001328Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00027093Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WBGene00059235Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WBGene00150407Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WBGene00155815Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WBGene00137812Caenorhabditis japonicaFrom_analysisInparanoid_8
CSP39.g11345Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g14121Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
WBGene00295250Trichuris murisFrom_analysisWormBase-Compara
WBGene00299237Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00095695Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00098403Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00099475Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109058Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00113122Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276112Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Laminin, N-terminal; Laminin N-terminal (Domain VI); Laminin IV; Laminin-type EGF domain; Concanavalin A-like lectin/glucanase domain superfamily; EGF-like domain; Laminin EGF domain; Laminin G domain; and Laminin B (Domain IV). Is an ortholog of C. elegans epi-1. In C. elegans, epi-1 is involved in several processes, including basement membrane organization; generation of neurons; and response to misfolded protein.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA15392
Corresponding_CDS_historyPPA15392:pp270
Corresponding_transcriptPPA15392.1
Other_sequenceCRC07145_1
JI163819.1
PP01640
CR01247
PPC02675_1
Experimental_infoMicroarray_results (14)
Expression_clusterWBPaper00041207:PP_dauer_down
MethodGene