WormBase Tree Display for Gene: WBGene00104946
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WBGene00104946 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | Ppa-epi-1 | Inferred_automatically | from gene merge | |||||
Sequence_name | PPA15392 | ||||||||
Molecular_name | PPA15392 | ||||||||
PPA15392.1 | |||||||||
PP74841 | |||||||||
Other_name | GENEPREDICTION_SNAP300000075088 | ||||||||
GENEPREDICTION_SNAP300000075089 | |||||||||
UMM-S66-11.9 | Person_evidence | WBPerson606 | |||||||
Public_name | Ppa-epi-1 | ||||||||
Species | Pristionchus pacificus | ||||||||
History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-epi-1 | ||||
3 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00104947 | ||||
Acquires_merge | WBGene00104947 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | epi | ||||||||
RNASeq_FPKM | WBls:0000032 | 3.87099 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
WBls:0000101 | 2.34522 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
3.16467 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
Ortholog (10) | |||||||||
Paralog | WBGene00095695 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
WBGene00098403 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00099475 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00109058 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00113122 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00276112 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Laminin, N-terminal; Laminin N-terminal (Domain VI); Laminin IV; Laminin-type EGF domain; Concanavalin A-like lectin/glucanase domain superfamily; EGF-like domain; Laminin EGF domain; Laminin G domain; and Laminin B (Domain IV). Is an ortholog of C. elegans epi-1. In C. elegans, epi-1 is involved in several processes, including basement membrane organization; generation of neurons; and response to misfolded protein. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | PPA15392 | |||||||
Corresponding_CDS_history | PPA15392:pp270 | ||||||||
Corresponding_transcript | PPA15392.1 | ||||||||
Other_sequence | CRC07145_1 | ||||||||
JI163819.1 | |||||||||
PP01640 | |||||||||
CR01247 | |||||||||
PPC02675_1 | |||||||||
Experimental_info | Microarray_results (14) | ||||||||
Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
Method | Gene |