WormBase Tree Display for Gene: WBGene00109058
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| WBGene00109058 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-lam-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA19504 | ||||||||
| Molecular_name | PPA19504 | ||||||||
| PPA19504.1 | |||||||||
| PP51091 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076144 | ||||||||
| UMM-S13-67.0 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-lam-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 May 2019 10:09:22 | WBPerson1983 | Name_change | CGC_name | Ppa-lam-3 | ||||
| 3 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-lam-3 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:27 | WBPerson1983 | Name_change | CGC_name | Ppa-lam-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lam | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.876023 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 2.62807 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00095695 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00098403 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00099475 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00104946 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00113122 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00276112 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Laminin IV; Laminin-type EGF domain; Concanavalin A-like lectin/glucanase domain superfamily; EGF-like domain; Laminin EGF domain; Laminin G domain; and Laminin B (Domain IV). Is an ortholog of C. elegans lam-3. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA19504 | |||||||
| Corresponding_transcript | PPA19504.1 | ||||||||
| Other_sequence (13) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_19203 | |||||||
| GPL14372_Probes_19205 | |||||||||
| GPL14372_Probes_19206 | |||||||||
| GPL14372_Probes_19207 | |||||||||
| Remark | [191001 pad] The CGC name Ppa-lam-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-lam-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
