WormBase Tree Display for Gene: WBGene00099475
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| WBGene00099475 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Identity | Version | 12 | ||||
| Name | Sequence_name | PPA09921 | ||||
| Molecular_name | PPA09921 | |||||
| PPA09921.1 | ||||||
| PP54333 | ||||||
| Other_name | GENEPREDICTION_SNAP300000066456 | |||||
| GENEPREDICTION_SNAP300000082026 | ||||||
| GENEPREDICTION_SNAP300000082027 | ||||||
| GENEPREDICTION_SNAP300000082028 | ||||||
| GENEPREDICTION_SNAP300000082029 | ||||||
| GENEPREDICTION_SNAP300000082030 | ||||||
| GENEPREDICTION_SNAP300000082031 | ||||||
| GENEPREDICTION_SNAP300000082032 | ||||||
| UMM-S498-0.87 | Person_evidence | WBPerson606 | ||||
| Ppa-tag-297 | Inferred_automatically | from gene merge | ||||
| Public_name | PPA09921 | |||||
| Species | Pristionchus pacificus | |||||
| History | Version_change (12) | |||||
| Acquires_merge | WBGene00114735 | |||||
| WBGene00114736 | ||||||
| WBGene00114738 | ||||||
| WBGene00114733 | ||||||
| WBGene00114732 | ||||||
| WBGene00114734 | ||||||
| WBGene00114737 | ||||||
| WBGene00204713 | ||||||
| WBGene00205356 | ||||||
| WBGene00206184 | ||||||
| Status | Live | |||||
| Gene_info | Biotype | SO:0001217 | ||||
| RNASeq_FPKM | WBls:0000032 | 8.16317 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
| RNASeq.pristionchus.WBls:0000032.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
| WBls:0000101 | 4.07312 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||
| RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
| 4.07876 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||
| Ortholog (40) | ||||||
| Paralog | WBGene00095695 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
| WBGene00098403 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00104946 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00109058 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00113122 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00276112 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| Structured_description | Automated_description | Enriched in intestine based on RNA-seq studies. Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin-like domain superfamily; EGF-like domain; Laminin EGF domain; Laminin-type EGF domain; Immunoglobulin subtype 2; Concanavalin A-like lectin/glucanase domain superfamily; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin I-set; Immunoglobulin-like domain; Laminin IV; Immunoglobulin domain; LDL receptor-like superfamily; Laminin G domain; Laminin B (Domain IV); Immunoglobulin-like fold; Growth factor receptor cysteine-rich domain superfamily; Low-density lipoprotein receptor domain class A; and Immunoglobulin subtype. Is an ortholog of C. elegans tag-297 and unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | PPA09921 | ||||
| Corresponding_transcript | PPA09921.1 | |||||
| Other_sequence (124) | ||||||
| Experimental_info | Microarray_results (34) | |||||
| Expression_cluster | WBPaper00041472:Phosphorylated_protein | |||||
| WBPaper00049334:PE_intestine_enriched | ||||||
| WBPaper00050265:C.albidus_vs_OP50_downregulated | ||||||
| WBPaper00050265:C.albidus_vs_OP50_upregulated | ||||||
| WBPaper00050265:C.curvatus_vs_OP50_downregulated | ||||||
| WBPaper00041207:PP_dauer_down | ||||||
| Method | Gene |
