WormBase Tree Display for Gene: WBGene00021280
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| WBGene00021280 | SMap | S_parent | Sequence | Y23H5B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspd-8 | Person_evidence | WBPerson1983 | |||||
| Sequence_name | Y23H5B.9 | ||||||||
| Molecular_name | Y23H5B.9 | ||||||||
| Y23H5B.9.1 | |||||||||
| CE23003 | |||||||||
| Other_name | Y23H5B.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y23H5B.9 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | nspd-8 | ||||||||
| DB_info | Database | AceView | gene | 1D112 | |||||
| WormQTL | gene | WBGene00021280 | |||||||
| WormFlux | gene | WBGene00021280 | |||||||
| NDB | locus_tag | CELE_Y23H5B.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021280|UniProtKB=Q9N472 | |||||||
| family | PTHR35375 | ||||||||
| NCBI | gene | 189529 | |||||||
| RefSeq | protein | NM_058595.1 | |||||||
| TREEFAM | TREEFAM_ID | TF319437 | |||||||
| TrEMBL | UniProtAcc | Q9N472 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N472 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Oct 2006 09:54:22 | WBPerson2970 | Name_change | CGC_name | nspd-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspd | ||||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (87) | |||||||||
| Paralog | WBGene00010633 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012781 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016058 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017386 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017808 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020715 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020860 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00043147 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022754 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Is affected by several genes including daf-2; eat-2; and sir-2.1 based on microarray studies. Is affected by five chemicals including Tunicamycin; resveratrol; and Acrylamide based on microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y23H5B.9 | |||||||
| Corresponding_transcript | Y23H5B.9.1 | ||||||||
| Other_sequence | CJC00760_1 | ||||||||
| CBC01729_1 | |||||||||
| FD515243.1 | |||||||||
| CSC01319_1 | |||||||||
| CR01874 | |||||||||
| CJC13517_1 | |||||||||
| CJC16388_1 | |||||||||
| CJC03533_1 | |||||||||
| CRC06731_1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036722 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055714 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020141 | ||||||||
| Expr1039273 | |||||||||
| Expr1159237 | |||||||||
| Expr2014485 | |||||||||
| Expr2032724 | |||||||||
| Drives_construct | WBCnstr00024596 | ||||||||
| Construct_product | WBCnstr00024596 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (27) | |||||||||
| Map_info | Map | I | Position | -8.43445 | Error | 0.02012 | |||
| Positive | Positive_clone | Y23H5B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
