WormBase Tree Display for Gene: WBGene00004316
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| WBGene00004316 | SMap | S_parent | Sequence | F37A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rbf-1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | F37A4.7 | ||||||||
| Molecular_name (14) | |||||||||
| Other_name | Rabph | Paper_evidence | WBPaper00013595 | ||||||
| CELE_F37A4.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | rbf-1 | ||||||||
| DB_info | Database | AceView | gene | 3H793 | |||||
| WormQTL | gene | WBGene00004316 | |||||||
| WormFlux | gene | WBGene00004316 | |||||||
| NDB | locus_tag | CELE_F37A4.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004316|UniProtKB=P41885 | |||||||
| family | PTHR45729 | ||||||||
| NCBI | gene | 175943 | |||||||
| RefSeq | protein | NM_001392126.1 | |||||||
| NM_001027396.5 | |||||||||
| NM_001379772.1 | |||||||||
| NM_001027395.5 | |||||||||
| SwissProt | UniProtAcc | P41885 | |||||||
| TREEFAM | TREEFAM_ID | TF351844 | |||||||
| UniProt_GCRP | UniProtAcc | P41885 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rbf | ||||||||
| Allele (346) | |||||||||
| Strain | WBStrain00029052 | ||||||||
| WBStrain00037267 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (51) | |||||||||
| Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004922 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004923 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004924 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004925 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004926 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011682 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | rbf-1 encodes the sole C. elegans rabphilin homolog; rbf-1 activity is required for normal basal rates of locomotion (in the absence of stimulation) and, in combination with SNARE components ric-4, snb-1, and unc-64, for normal rates of both basal and stimulated locomotion; RBF-1 is expressed in the nerve ring and in the dorsal and ventral nerve cords and colocalizes with synaptic vesicle markers. | Paper_evidence | WBPaper00004976 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 22 Jun 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable metal ion binding activity. Involved in dense core granule exocytosis and positive regulation of locomotion. Located in synaptic vesicle. Expressed in dorsal nerve cord; nerve ring; neurons; and ventral nerve cord. Is an ortholog of human RPH3A (rabphilin 3A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F37A4.7a | |||||||
| F37A4.7b | |||||||||
| F37A4.7c | |||||||||
| F37A4.7d | |||||||||
| Corresponding_CDS_history | F37A4.7d:wp275 | ||||||||
| Corresponding_transcript | F37A4.7a.1 | ||||||||
| F37A4.7a.2 | |||||||||
| F37A4.7a.3 | |||||||||
| F37A4.7b.1 | |||||||||
| F37A4.7c.1 | |||||||||
| F37A4.7d.1 | |||||||||
| Other_sequence (48) | |||||||||
| Associated_feature (35) | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1718 | ||||||||
| Expr1719 | |||||||||
| Expr3633 | |||||||||
| Expr1024340 | |||||||||
| Expr1032141 | |||||||||
| Expr1150454 | |||||||||
| Expr2015267 | |||||||||
| Expr2033501 | |||||||||
| Drives_construct | WBCnstr00000698 | ||||||||
| WBCnstr00010412 | |||||||||
| Construct_product | WBCnstr00000698 | ||||||||
| WBCnstr00007721 | |||||||||
| WBCnstr00010412 | |||||||||
| WBCnstr00011558 | |||||||||
| Antibody | WBAntibody00000428 | ||||||||
| Microarray_results (43) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | III | Position | -1.01086 | Error | 0.003652 | |||
| Positive | Positive_clone | F37A4 | Inferred_automatically (2) | ||||||
| Mapping_data | Multi_point | 4626 | |||||||
| 4987 | |||||||||
| 5453 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00013595 | ||||||||
| WBPaper00019387 | |||||||||
| WBPaper00026667 | |||||||||
| WBPaper00026785 | |||||||||
| WBPaper00027193 | |||||||||
| WBPaper00031852 | |||||||||
| WBPaper00037804 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040543 | |||||||||
| WBPaper00041003 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061027 | |||||||||
| WBPaper00062055 | |||||||||
| WBPaper00064187 | |||||||||
| WBPaper00064789 | |||||||||
| WBPaper00066129 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
