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WormBase Tree Display for Gene: WBGene00045401

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Name Class

WBGene00045401SMapS_parentSequenceT26F2
IdentityVersion2
NameCGC_nameeol-1Paper_evidenceWBPaper00045830
Person_evidenceWBPerson1627
Sequence_nameT26F2.3
Molecular_nameT26F2.3
T26F2.3.1
CE41028
T26F2.3.2
Other_nameCELE_T26F2.3Accession_evidenceNDBBX284605
Public_nameeol-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change127 Apr 2007 09:42:00WBPerson4025EventSplit_fromWBGene00012058
222 Dec 2014 11:59:25WBPerson2970Name_changeCGC_nameeol-1
Split_fromWBGene00012058
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classeol
Allele (35)
Possibly_affected_byWBVar02157243
RNASeq_FPKM (74)
GO_annotation (20)
Ortholog (50)
Paralog (11)
Structured_descriptionConcise_descriptioneol-1 encodes a homolog of vertebrate DXO/Dom3Z, a decapping and exoribonuclease protein that functions in pre-mRNA quality control; in C. elegans, EOL-1 activity is required in the URX sensory neurons for inhibition of olfactory learning; mouse Dom3Z can functionally substitute for C. elegans EOL-1, demonstrating conservation of activity for these proteins; in adult hermaphrodites, an eol-1::gfp promoter fusion is expressed in several head and tail neurons, including URX, AVF, and PQR, and in reproductive tissues.Paper_evidenceWBPaper00045830
Curator_confirmedWBPerson1843
Date_last_updated22 Dec 2014 00:00:00
Automated_descriptionPredicted to enable 5'-3' exonuclease activity; mRNA 5'-diphosphatase activity; and mRNA binding activity. Involved in regulation of olfactory learning. Predicted to be located in cytosol and nucleus. Expressed in AVF; oxygen sensory neurons; and reproductive system.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST26F2.3
Corresponding_CDS_historyT26F2.3:wp195
T26F2.3:wp215
Corresponding_transcript (2)
Other_sequenceCBC10792_1
Associated_featureWBsf234889
Experimental_infoRNAi_resultWBRNAi00054220Inferred_automaticallyRNAi_primary
WBRNAi00019270Inferred_automaticallyRNAi_primary
Expr_patternExpr12008
Expr15788
Expr1019371
Expr1157766
Expr2011336
Expr2029572
Drives_constructWBCnstr00020068
WBCnstr00020069
WBCnstr00020070
WBCnstr00023236
Construct_productWBCnstr00020068
WBCnstr00023236
WBCnstr00042520
Microarray_results (16)
Expression_clusterWBPaper00037950:A-class-motor-neurons_embryo_enriched
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00042034:NO_upregulated_hsf-1(sy441)
WBPaper00042034:NO_upregulated_N2
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045401:N.parisii_8h_upregulated
WBPaper00045401:N.parisii_16h_upregulated
WBPaper00045401:N.parisii_30h_upregulated
WBPaper00045401:N.parisii_40h_upregulated
WBPaper00045401:N.parisii_64h_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00046128:ethanol_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048690:gonad-hermaphrodite-biased
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049484:elt-2(RNAi)_upregulated_L4
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049635:dop-1(vs100)_upregulated
WBPaper00049905:Age_variant_expression
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00051371:Orsay-virus-infection_upregulated_rde-1(ne219)
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053020:OrsayVirus-infection_upregulated
WBPaper00053020:OrsayVirus-infection_upregulated_microarray
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056039:ptl-1(ok621)_upregulated
WBPaper00056039:ptrn-1(tm5597)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:Cry5B_downregulated
WBPaper00056167:ifo-1(kc2)_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056218:daf-16(mu86)_upregulated_Day7
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
WBPaper00057162:meg-3_meg-4_upregulated_sRNA
WBPaper00057265:metaformin_upregulated_OP50
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00058969:RIS_depleted
WBPaper00059253:stearic-acid_upregulated
WBPaper00059253:sucrose_stearic-acid_upregulated
WBPaper00059373:stt-3(RNAi)_upregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059426:SiO2-nanoparticles_downregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00059839:S.maltophilia_regulated
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060871:M.humicola-extract_4h_regulated
WBPaper00060871:M.humicola-infection_12h_regulated
WBPaper00060871:M.humicola-infection_24h_regulated
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00060886:met-2(n4256)_upregulated
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00060921:cat-2(e1112)_upregulated
WBPaper00060921:tph-1(mg280)_upregulated
WBPaper00061040:FW1256_downregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061340:AIN
WBPaper00061340:Neuroblast_AIZ_FLP_RMG
WBPaper00061340:rect_D
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061390:daf-22(ok693)_ascarosides_upregulated
WBPaper00061527:C17H1.6-C17H1.13
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062345:bortezomib_30min_upregulated_N2
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00062590:Aging_upregulated_coelomocyte
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064494:postdauer_upregulated_WholeAnimal
WBPaper00064509:static-magnetic-field_downregulated
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064532:pals-25(jy111)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064999:miR-229-64-65-66_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:JU1400_N.parisii_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065841:12_0
WBPaper00065841:39_0
WBPaper00065841:39_1
WBPaper00065841:43_0
WBPaper00065841:79_1
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00065995:M.humicola-extract_downregulated_N2
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4386_cluster_5_4
cgc4489_group_12
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027758:Group_III
WBPaper00029437:dcr-1_upregulated
WBPaper00030839:Embryo_A_Class
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00032062:age_regulated_genes
WBPaper00036286:Pattern_B
WBPaper00036286:Pattern_F
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00040876:mir-35_upregulated
WBPaper00040963:Q50_up
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041207:CE_dauer_up
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:daf-16_fasting_upregulated
WBPaper00041960:kgb-1_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042574:N2_OrsayVirus_upregulated
WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00044535:male_upregulated
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00045401:N.parisii_34h_upregulated_N2
WBPaper00045673:colistin_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00050767:Octopamine_induced
WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
WBPaper00053550:daf-19(m86)_downregulated_L1
WBPaper00056330:mrps-5(RNAi)_upregulated
Map_infoMapVPosition5.86927
PositivePositive_cloneT26F2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00045830
WBPaper00051856
WBPaper00060692
WBPaper00061319
WBPaper00064708
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene