WormBase Tree Display for Gene: WBGene00017499

WBGene00017499 SMap: S_parent: Sequence: F15E11
  Identity: Version: 2
    Name: CGC_name: pud-1.1 Person_evidence: WBPerson143
      Sequence_name: F15E11.13
      Molecular_name (3)
      Other_name: CELE_F15E11.13 Accession_evidence: NDB BX284605
      Public_name: pud-1.1
    DB_info: Database: AceView gene 5C809
        WormQTL gene WBGene00017499
        WormFlux gene WBGene00017499
        NDB locus_tag CELE_F15E11.13
        Panther gene CAEEL|WormBase=WBGene00017499|UniProtKB=G5EET8
          family PTHR31557
        NCBI gene 178714
        RefSeq protein NM_001374907.2
        TREEFAM TREEFAM_ID TF319694
        TrEMBL UniProtAcc G5EET8
        UniProt_GCRP UniProtAcc G5EET8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Dec 2012 13:04:39 WBPerson2970 Name_change: CGC_name: pud-1.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pud
    Allele (18)
    RNASeq_FPKM (74)
    Ortholog (14)
    Paralog: WBGene00017490 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00017498 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00017501 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00017500 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00044489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044490 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00021236 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Concise_description: pud-1.1, along with pud-1.2, encodes a protein (CE25224) of unknown function; the PUD-1.1/PUD-1.2 proteins are present at significantly higher levels in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-1.1(RNAi) animals have no obvious mutant phenotype (i. e., they have no obvious defect in fertility or germline maintenance); the PUD-1.1/PUD-1.2 proteins belong to a nematode-specific family including the paralogs PUD-2.1, PUD-2.2, PUD-3, and PUD-4. Paper_evidence: WBPaper00030894
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Jun 2015 00:00:00
      Automated_description: Expressed in hypodermis and intestine. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F15E11.13
    Corresponding_transcript: F15E11.13.1
    Associated_feature: WBsf231504
      WBsf231505
  Experimental_info: RNAi_result: WBRNAi00044733 Inferred_automatically: RNAi_primary
      WBRNAi00044732 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11080
      Expr1011659
      Expr1148699
      Expr2015177
    Drives_construct: WBCnstr00017876
      WBCnstr00017880
      WBCnstr00017882
      WBCnstr00018112
      WBCnstr00027253
    Construct_product: WBCnstr00017876
      WBCnstr00017878
      WBCnstr00017880
      WBCnstr00017882
      WBCnstr00018112
      WBCnstr00027253
    Antibody: WBAntibody00001282
    Expression_cluster: WBPaper00024704:Soluble_protein
      WBPaper00029047:atx-3_downregulated
      WBPaper00030894:daf-2(e1370ts)_upregulated
      WBPaper00035926:A.hydrophila_regulated
      WBPaper00038118:aak-2(gt33)_downregulated
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040134:nhr-49(RNAi)_regulated_protein
      WBPaper00040193:pdf-1(tm1996)_downregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00041954:ethanol_upregulated
      WBPaper00042215:wdr-23(tm1817)_downregulated
      WBPaper00042477:prp-8(RNAi)_downregulated_RNAseq
      WBPaper00044030:nhr-8(hd117)_downregulated
      WBPaper00044128:daf-2(e1370)_upregulated
      WBPaper00044246:pgrn-1_ced-3_downregulated
      WBPaper00044746:aging_upregulated_Day5
      WBPaper00044760:somatic_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045017:blmp-1(tm548)_downregulated
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045303:ZK1236.1(tm4178)_upregulated
      WBPaper00045401:N.parisii_8h_downregulated
      WBPaper00045401:N.parisii_30h_downregulated
      WBPaper00045401:N.parisii_40h_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_downregulated_protein
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049018:ham-3(RNAi)_downregulated
      WBPaper00049018:swsn-2.2(RNAi)_downregulated
      WBPaper00049217:TCER-1_upregulated
      WBPaper00049325:CB4856_vs_N2_DEG
      WBPaper00049368:daf-2(e1370)_downregulated
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049595:P.aeruginosa_12h_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051021:4-bromodiphenyl-ether_downregulated
      WBPaper00051039:ash-2(RNAi)_regulated_intestine
      WBPaper00051039:intestine_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053020:sid-3(ok973)_downregulated
      WBPaper00053020:sta-1(ok587)_downregulated
      WBPaper00053092:procyanidins_downregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053295:lin-22(ot267)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053792:Ochrobactrum_upregulated
      WBPaper00054189:aging_regulated_protein
      WBPaper00054189:P.aeruginosa_regulated_protein
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056034:pals-25(jy9)_downregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056167:ifo-1(kc2)_upregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00057136:yap-1(ys38)_downregulated
      WBPaper00057196:raga-1(ok386)_upregulated)
      WBPaper00057347:nhr-14(tm1473)_downreglated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_protein
      WBPaper00059373:stt-3(RNAi)_downregulated
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059604:fluvastatin_upregulated_dlk-1(km12)
      WBPaper00059604:fluvastatin_upregulated_N2
      WBPaper00059605:simr-1(cmp36)_upregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_adult
      WBPaper00059739:hira-1(gk835598)_downregulated_L4
      WBPaper00059895:wounding_downregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060224:atf-6(ok551)_downregulated
      WBPaper00060273:isp-1(qm150)_downregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061377:MYRF-2_interacting
      WBPaper00061377:PAN-1_interacting
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:gst-26-pho-1_10767
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061613:human-amyloid-beta_downregulated
      WBPaper00061651:Intestine_enriched
      WBPaper00061653:alh-4(hj221)_downregulated
      WBPaper00061853:tunicamycin_upregulated_N2
      WBPaper00062002:Day4-adult_secretome
      WBPaper00062056:lin-35(n745)_downregulated
      WBPaper00062056:lin-37(n758)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062293:clk-1(qm30)_downregulated
      WBPaper00062293:isp-1(qm150)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_protein
      WBPaper00064005:starvation_upregulated_N2_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_8h_downregulated_mRNA
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064532:pals-22(jy3)_downregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00064992:Eugenol_downregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-5(RNAi)_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065288:mdt-15(tm2182)_downregulated
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065315:mating_upregulated_Day6-7
      WBPaper00065392:Lb.delbrueckii_downregulated
      WBPaper00065392:Lb.gasseri_downregulated
      WBPaper00065392:Lb.plantarum_downregulated
      WBPaper00065392:Lb.reuteri_downregulated
      WBPaper00065392:Lb.rhamnosus_downregulated
      WBPaper00065392:P.pentosaceus_downregulated
      WBPaper00065581:hpk-1(pk1393)_downregulated
      WBPaper00065734:unc-25(e156)_downregulated
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_upregulated_N2
      WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:Cisplatin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_downregulated_WT
    Interaction (16)
  Map_info: Map: V Position: -14.8668
    Positive: Positive_clone: F15E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024325
    WBPaper00030894
    WBPaper00037428
    WBPaper00046929
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-14.8654)
  Method: Gene