WormBase Tree Display for Gene: WBGene00016497

WBGene00016497 SMap: S_parent: Sequence: C37C3
  Identity: Version: 4
    Name: CGC_name: vps-32.2 Person_evidence: WBPerson1763
      Sequence_name: C37C3.3
      Molecular_name: C37C3.3
      Other_name: phi-63 Person_evidence: WBPerson2582
        CELE_C37C3.3 Accession_evidence: NDB BX284605
      Public_name: vps-32.2
    DB_info: Database: AceView gene 5I331
        WormQTL gene WBGene00016497
        WormFlux gene WBGene00016497
        NDB locus_tag CELE_C37C3.3
        NCBI gene 183288
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Mar 2005 13:54:35 WBPerson2970 Name_change: Other_name: phi-63
        3 04 Jun 2007 15:54:19 WBPerson2970 Name_change: CGC_name: vps-32.2
        4 21 Sep 2017 13:55:50 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: vps
    Allele (15)
    RNASeq_FPKM (74)
    Ortholog: WBGene00126899 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00142327 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00054117 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00101448 Pristionchus pacificus From_analysis: Inparanoid_8
    Paralog: WBGene00011976 Caenorhabditis elegans From_analysis: Panther
      WBGene00016961 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
      WBGene00018290 Caenorhabditis elegans From_analysis: Panther
      WBGene00022027 Caenorhabditis elegans From_analysis: Panther
      WBGene00022017 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00020025 Caenorhabditis elegans From_analysis: TreeFam
            Panther
    Structured_description: Automated_description: Enriched in PLM; Y cell; intestine; and sensory neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-12; and let-7 based on tiling array; proteomic; microarray; and RNA-seq studies. Is affected by multi-walled carbon nanotube; Rifampin; and allantoin based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: C37C3.3:wp154
      C37C3.3:wp261
    Corresponding_pseudogene: C37C3.3
    Other_sequence: FF680403.1
      SSC00343_1
      FK800257.1
    Associated_feature: WBsf1000532
  Experimental_info: Expr_pattern: Chronogram629
      Expr3595
      Expr5457
      Expr1011820
      Expr1037074
      Expr1146108
      Expr2018022
      Expr2036159
    Drives_construct: WBCnstr00004061
      WBCnstr00028017
    Construct_product (2)
    Microarray_results: SMD_C37C3.3
      SMD_C37C3.3:2
      172257_x_at
      Aff_C37C3.3
      GPL13394_WBGene00016497
      GPL13914_C37C3.3
      GPL14144_C37C3.3_368-427_0.945_2_A
      GPL8673_C37C3_3P00291
      GPL8673_C37C3_3P00300
      GPL8673_C37C3_3P00433
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049098:hrde-1(tm1200)-induced_23C
      WBPaper00049098:hrde-1(tm1200)-repressed_23C
      WBPaper00049377:MWCNT_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00051265:F1_hrde-1(tm1200)_upregulated
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00055226:adr-1(tm668)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00059194:klf-1(RNAi)_regulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061340:Y
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:tub-2_4713-daf-2_5288
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rde-3(r459)_downregulated
      WBPaper00044091:Bpseudomallei_induced_12h
    Interaction (42)
  Map_info: Map: V Position: 0.917665 Error: 0.000744
    Positive: Positive_clone: C37C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026641
    WBPaper00033139
    WBPaper00038491
    WBPaper00039823
    WBPaper00040525
    WBPaper00042550
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene