WormBase Tree Display for Gene: WBGene00018290
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| WBGene00018290 | SMap | S_parent | Sequence | F41E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-60 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | F41E6.9 | ||||||||
| Molecular_name | F41E6.9 | ||||||||
| F41E6.9.1 | |||||||||
| CE10260 | |||||||||
| Other_name | CELE_F41E6.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | vps-60 | ||||||||
| DB_info | Database | AceView | gene | 5J86 | |||||
| WormQTL | gene | WBGene00018290 | |||||||
| WormFlux | gene | WBGene00018290 | |||||||
| NDB | locus_tag | CELE_F41E6.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018290|UniProtKB=O16458 | |||||||
| family | PTHR22761 | ||||||||
| NCBI | gene | 179242 | |||||||
| RefSeq | protein | NM_072818.6 | |||||||
| TREEFAM | TREEFAM_ID | TF300122 | |||||||
| TrEMBL | UniProtAcc | O16458 | |||||||
| UniProt_GCRP | UniProtAcc | O16458 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | vps-60 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (19) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028095 | ||||||||
| 00028096 | |||||||||
| 00028097 | |||||||||
| 00123469 | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00011976 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016497 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016961 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022027 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020025 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to be located in multivesicular body. Is an ortholog of human CHMP5 (charged multivesicular body protein 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F41E6.9 | |||||||
| Corresponding_transcript | F41E6.9.1 | ||||||||
| Other_sequence (73) | |||||||||
| Associated_feature | WBsf652857 | ||||||||
| WBsf655571 | |||||||||
| WBsf981969 | |||||||||
| WBsf1000707 | |||||||||
| WBsf1020060 | |||||||||
| WBsf234107 | |||||||||
| WBsf234108 | |||||||||
| WBsf234109 | |||||||||
| WBsf234110 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00002255 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046999 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032095 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002149 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076409 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014752 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014761 | ||||||||
| Expr1037877 | |||||||||
| Expr1150863 | |||||||||
| Expr2018038 | |||||||||
| Expr2036175 | |||||||||
| Drives_construct | WBCnstr00026634 | ||||||||
| Construct_product | WBCnstr00026634 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | V | Position | 1.48344 | |||||
| Positive | Positive_clone | F41E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062371 | |||||||||
| WBPaper00065275 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
