WormBase Tree Display for Gene: WBGene00022027

WBGene00022027 SMap: S_parent: Sequence: Y65B4A
  Identity: Version: 2
    Name: CGC_name: vps-20 Person_evidence: WBPerson3094
      Sequence_name: Y65B4A.3
      Molecular_name: Y65B4A.3
        Y65B4A.3.1
        CE22731
      Other_name: Y65B4A.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y65B4A.h Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y65B4A.3 Accession_evidence: NDB BX284601
      Public_name: vps-20
    DB_info: Database: AceView gene 1B111
        WormQTL gene WBGene00022027
        WormFlux gene WBGene00022027
        NDB locus_tag CELE_Y65B4A.3
        Panther gene CAEEL|WormBase=WBGene00022027|UniProtKB=Q9BL60
          family PTHR22761
        NCBI gene 171654
        RefSeq protein NM_058361.7
        TREEFAM TREEFAM_ID TF105929
        TrEMBL UniProtAcc Q9BL60
        UniProt_GCRP UniProtAcc Q9BL60
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 24 Nov 2008 09:30:52 WBPerson2970 Name_change: CGC_name: vps-20
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    Allele (32)
    Strain: WBStrain00032564
    RNASeq_FPKM (74)
    GO_annotation: 00091921
      00091922
      00091923
      00091924
      00091925
      00091926
      00126205
    Ortholog (37)
    Paralog: WBGene00011976 Caenorhabditis elegans From_analysis: Panther
      WBGene00016497 Caenorhabditis elegans From_analysis: Panther
      WBGene00016961 Caenorhabditis elegans From_analysis: Panther
      WBGene00018290 Caenorhabditis elegans From_analysis: Panther
      WBGene00020025 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to be located in multivesicular body. Predicted to be part of ESCRT III complex. Is an ortholog of human CHMP6 (charged multivesicular body protein 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y65B4A.3
    Corresponding_transcript: Y65B4A.3.1
    Other_sequence (39)
    Associated_feature: WBsf643024
      WBsf217151
  Experimental_info: RNAi_result (30)
    Expr_pattern: Expr3578
      Expr12777
      Expr1017074
      Expr1039681
      Expr1161332
      Expr2018013
      Expr2036150
    Construct_product: WBCnstr00011502
    Microarray_results (27)
    Expression_cluster (80)
    Interaction (39)
  Map_info: Map: I Position: -18.6495 Error: 0.056561
    Positive: Positive_clone: Y65B4A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031212
    WBPaper00038491
    WBPaper00038585
    WBPaper00039823
    WBPaper00040674
    WBPaper00046327
    WBPaper00055090
    WBPaper00056973
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene