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WormBase Tree Display for Gene: WBGene00003607

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Name Class

WBGene00003607EvidencePaper_evidenceWBPaper00003416
WBPaper00004181
SMapS_parentSequenceF33D4
IdentityVersion1
NameCGC_namenhr-8Person_evidenceWBPerson600
Sequence_nameF33D4.1
Molecular_nameF33D4.1a
F33D4.1a.1
CE33927
F33D4.1b
CE33928
F33D4.1b.1
Other_nameCELE_F33D4.1Accession_evidenceNDBBX284604
Public_namenhr-8
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (42)
Legacy_informationNMK. Nuclear hormone receptor superfamily. [AE]
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y50A3 etc. [AE]
StrainWBStrain00000059
WBStrain00051691
WBStrain00054632
RNASeq_FPKM (74)
GO_annotation (17)
Ortholog (30)
Paralog (19)
Structured_description (2)
Disease_infoPotential_model (53)
Molecular_infoCorresponding_CDS (2)
Corresponding_CDS_historyF33D4.1a:wp99
F33D4.1b:wp99
Corresponding_transcriptF33D4.1a.1
F33D4.1b.1
Other_sequenceOden_contig20559
Oden_isotig10723
DN558166.1
AYC01323_1
HBC03177_1
LSC01052_1
AE02063
ES414143.1
Associated_featureWBsf646108
WBsf646109
WBsf660331
WBsf660332
WBsf978331
WBsf228565
WBsf228566
Transcription_factorWBTranscriptionFactor000264
Experimental_infoRNAi_result (16)
Expr_patternExpr1351
Expr11216
Expr1023140
Expr1031655
Expr1150089
Expr2014241
Expr2032482
Drives_constructWBCnstr00010232
WBCnstr00036006
Construct_productWBCnstr00010232
WBCnstr00018225
WBCnstr00036006
Regulate_expr_clusterWBPaper00044030:nhr-8(hd117)_downregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062446:nhr-8(ok186)_downregulated
WBPaper00062446:nhr-8(ok186)_upregulated
Microarray_results (29)
Expression_clusterWBPaper00032425:down_in_alg-1
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:intestine_CoreEnriched
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00044030:nhr-8(hd117)_downregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045774:clk-1_downregulated
WBPaper00046121:endoderm_unique
WBPaper00046338:intestine_unique
WBPaper00046509:lin-35(n745)_downregulated
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055013:spt-16(RNAi)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059763:neuron_acr-2(n2420gf)_regulated
WBPaper00059895:wounding_upregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060871:M.humicola-extract_1h_regulated
WBPaper00060871:M.humicola-extract_4h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Intestine
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:F58F9.3_11574-R07B7.6
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062305:P.brevicompactum_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062446:nhr-8(ok186)_downregulated
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_downregulated_Day5
WBPaper00065841:3_4
WBPaper00065841:12_0
WBPaper00065841:26_2
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_8
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:rde-3(r459)_upregulated
WBPaper00034757:up_by_oxidative_stress
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osmotically_regulated
WBPaper00036383:ash-2_L3_regulated
WBPaper00037695:WC_5-day
WBPaper00038304:octr-1_regulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
WBPaper00040876:mir-35_downregulated
WBPaper00040963:Q50_down
WBPaper00040963:Q100_down
WBPaper00040963:TA100_up
WBPaper00040963:TA300_up
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00041960:daf-16_fasting_upregulated
WBPaper00041960:jun-1_fasting_upregulated
WBPaper00041960:kgb-1_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_N2
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:Cluster_C
[cgc6390]:herm_soma-enriched
Interaction (68)
WBProcessWBbiopr:00000001
WBbiopr:00000121
Map_infoMapIVPosition3.41773Error0.007272
PositivePositive_cloneF33D4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Y50A3Person_evidenceWBPerson600
Y53H2Person_evidenceWBPerson600
Y54E12Person_evidenceWBPerson600
Mapping_dataMulti_point4520
Pseudo_map_position
Reference (53)
Remarkcm14e12 unnecessary in sequence list. sdm 11/00
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene