WormBase Tree Display for Gene: WBGene00003006

WBGene00003006 SMap: S_parent: Sequence: Y71F9B
  Identity: Version: 1
    Name: CGC_name: lin-17 Person_evidence: WBPerson261
      Sequence_name: Y71F9B.5
      Molecular_name (11)
      Other_name: CELE_Y71F9B.5 Accession_evidence: NDB BX284601
      Public_name: lin-17
    DB_info: Database: AceView gene 1D285
        WormQTL gene WBGene00003006
        SignaLink protein WBGene00003006
        WormFlux gene WBGene00003006
        NDB locus_tag CELE_Y71F9B.5
        Panther gene CAEEL|WormBase=WBGene00003006|UniProtKB=G5EDV1
          family PTHR11309
        NCBI gene 171832
        RefSeq protein NM_001026642.6
            NM_058627.7
            NM_001306438.3
            NR_131370.1
        TrEMBL UniProtAcc Q95Y45
            G5EDV1
            A0A078BS14
        UniProt_GCRP UniProtAcc G5EDV1
        RNAcentral URSid URS000079DEB5
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Molecular_info: Corresponding_CDS: Y71F9B.5a
      Y71F9B.5b
      Y71F9B.5c
    Corresponding_transcript: Y71F9B.5d
      Y71F9B.5a.1
      Y71F9B.5a.2
      Y71F9B.5b.1
      Y71F9B.5c.1
    Other_sequence (21)
    Associated_feature: WBsf643101
      WBsf655768
      WBsf656071
      WBsf656072
      WBsf656073
      WBsf656074
      WBsf656075
      WBsf656076
      WBsf656077
      WBsf716650
      WBsf982948
      WBsf982949
      WBsf982950
      WBsf982951
      WBsf982952
      WBsf982953
      WBsf982954
      WBsf982955
      WBsf982956
      WBsf1009385
      WBsf1009386
      WBsf1009387
      WBsf1009388
      WBsf1009389
      WBsf217327
      WBsf217328
      WBsf217329
      WBsf217330
      WBsf217331
      WBsf217332
  Experimental_info: RNAi_result: WBRNAi00037782 Inferred_automatically: RNAi_primary
      WBRNAi00101449 Inferred_automatically: RNAi_primary
      WBRNAi00094915 Inferred_automatically: RNAi_primary
      WBRNAi00113628 Inferred_automatically: RNAi_primary
      WBRNAi00098854 Inferred_automatically: RNAi_primary
      WBRNAi00101347 Inferred_automatically: RNAi_primary
      WBRNAi00101480 Inferred_automatically: RNAi_primary
      WBRNAi00101396 Inferred_automatically: RNAi_primary
      WBRNAi00058182 Inferred_automatically: RNAi_primary
    Expr_pattern (21)
    Drives_construct (16)
    Construct_product (21)
    Microarray_results (34)
    Expression_cluster: WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Oogenic
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00046121:ecdoderm_unique
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048988:neuron_expressed
      WBPaper00049217:TCER-1_downregulated
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050182:lmn-1(L535P)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051265:F1_morc-1(tm6048)_upregulated
      WBPaper00051558:fog-2(q71)_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADA_ADE_grandparent
      WBPaper00061340:ASK_parent
      WBPaper00061340:Ciliated_non_amphid_neuron
      WBPaper00061340:DVA
      WBPaper00061340:Excretory_gland
      WBPaper00061340:g1A_parent
      WBPaper00061340:g2_parent
      WBPaper00061340:I1_parent
      WBPaper00061340:I2_grandparent
      WBPaper00061340:IL1_parent
      WBPaper00061340:mu_int_mu_anal
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_HSN_PHB
      WBPaper00061340:Neuroblast_IL1_IL2
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Neuroblast_URX_CEPDx
      WBPaper00061340:NSM_parent
      WBPaper00061340:OLL_parent
      WBPaper00061340:OLQ_grandparent
      WBPaper00061340:OLQ_parent
      WBPaper00061340:PVP
      WBPaper00061340:PVQ_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4748)_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:sol-1-jnk-1_18695
      WBPaper00062156:jmjd-5(zr1234)_downregulated_germline
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062184:PA14_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062590:Aging_downregulated_intestine
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065841:7_4
      WBPaper00065841:14_0
      WBPaper00065841:14_2
      WBPaper00065841:19_0
      WBPaper00065841:132_0
      WBPaper00065841:145_0
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4386_cluster_6_6
      cgc4489_group_21
      WBPaper00025032:cluster_60
      WBPaper00025032:cluster_140
      WBPaper00025032:PAL-1_target_genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:rrf-1(pk1417)_upregulated
      WBPaper00029437:dcr-1_upregulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041174:environmental
      WBPaper00041174:genotype_environment_interaction
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00042548:miRISC_enriched
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      [cgc5767]:cluster_2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(83_min)
      [cgc6390]:male_sex-enriched
    Interaction (191)
    Anatomy_function: WBbtf0772
      WBbtf0773
      WBbtf0776
      WBbtf0788
      WBbtf0818
    WBProcess: WBbiopr:00000017
      WBbiopr:00000023
      WBbiopr:00000073
      WBbiopr:00000112
  Map_info: Map: I Position: -7.32492 Error: 0.04152
    Well_ordered
    Positive: Inside_rearr: nDp1
      Positive_clone: W09G8
        Y71F9B Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 3196
        7005
        7006
      Multi_point (25)
      Pos_neg_data: 4081
        4354
        5696
        6234
        6577
        6630
        6640
    Landmark_gene
  Reference (267)
  Picture: WBPicture0000013083
  Remark: Datum inferred from Sawa et al. 1996, lin-17 extends rightward from W09G8, into phage clone lambda6-2.
  Method: Gene