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WormBase Tree Display for Gene: WBGene00021977

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Name Class

WBGene00021977SMapS_parentSequenceY58A7A
IdentityVersion1
NameSequence_nameY58A7A.3
Molecular_nameY58A7A.3
Y58A7A.3.1
CE26196
Y58A7A.3.2
Other_nameY58A7A.cCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y58A7A.3Accession_evidenceNDBBX284605
Public_nameY58A7A.3
DB_infoDatabaseAceViewgene5F556
WormQTLgeneWBGene00021977
WormFluxgeneWBGene00021977
NDBlocus_tagCELE_Y58A7A.3
PanthergeneCAEEL|WormBase=WBGene00021977|UniProtKB=Q966A6
familyPTHR31063
NCBIgene178896
RefSeqproteinNM_071959.9
TREEFAMTREEFAM_IDTF317685
TrEMBLUniProtAccQ966A6
UniProt_GCRPUniProtAccQ966A6
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00094396Inferred_automaticallyFrom strain object: RB2449
WBVar01009765
WBVar01009766
WBVar01499528
WBVar00271932
WBVar00271933
WBVar00271934
WBVar00271935
WBVar00053282
WBVar00271936
WBVar00271937
WBVar00271938
WBVar00271939
WBVar01498993
WBVar00271940
WBVar00271941
WBVar00271942
WBVar02122655
WBVar00271943
WBVar00271944
WBVar00271945
WBVar00271946
WBVar00271947
WBVar00271948
WBVar00251947
WBVar00271950
WBVar01499740
WBVar00254722
WBVar01500129
WBVar00254206
WBVar00457658
WBVar00457659
WBVar00457660
WBVar00457661
WBVar00457662
WBVar02124047
WBVar02121475
WBVar01651245
WBVar01651246
WBVar01651247
WBVar01499496
WBVar01499316
WBVar00208735
WBVar01009757
WBVar01009758
WBVar01009759
WBVar01009760
WBVar01009761
WBVar01009762
WBVar01009763
WBVar01500066
WBVar01009764
StrainWBStrain00033124
RNASeq_FPKM (74)
GO_annotation (2)
Ortholog (50)
ParalogWBGene00017466Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00017467Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00017834Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021978Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00021979Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable zinc ion binding activity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY58A7A.3
Corresponding_transcriptY58A7A.3.1
Y58A7A.3.2
Other_sequenceCJC08470_1
Associated_featureWBsf652606
WBsf233644
Experimental_infoRNAi_resultWBRNAi00037620Inferred_automaticallyRNAi_primary
WBRNAi00057726Inferred_automaticallyRNAi_primary
WBRNAi00057728Inferred_automaticallyRNAi_primary
Expr_patternExpr1020558
Expr1161154
Expr2008088
Expr2026326
Drives_constructWBCnstr00024379
Construct_productWBCnstr00024379
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00041954:ethanol_upregulated
WBPaper00042477:prp-8(RNAi)_upregulated_RNAseq
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044260:nicotic-acid_downregulated
WBPaper00044316:CH3HgCl_2.0uM_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044857:BAR-1_upregulated
WBPaper00045017:blmp-1(tm548)_upregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046499:AMPK_regulated
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048952:glucose_repressed
WBPaper00048988:neuron_expressed
WBPaper00049098:heat-induced_hrde-1(tm1200)
WBPaper00049134:hpk-1(pk1393)_upregulated
WBPaper00049217:DAF-16_downregulated
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049489:AMsh-glia_enriched
WBPaper00049498:npr-1(ur89)_regulated_5
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049905:Age_variant_expression
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050193:cec-4(ok3124)_upregulated_L1
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050448:KGB-1-induced
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:nucleus_specific
WBPaper00051257:Levamisole_upregulated
WBPaper00051265:F4_morc-1(tm6048)_downregulated
WBPaper00051305:vit-2(ac3)_upregulated
WBPaper00051371:Orsay-virus-infection_upregulated_rde-1(ne219)
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-5(ram2)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053657:JU2519_M.humicola-infection_12hr
WBPaper00053657:JU2519_M.humicola-infection_24hr
WBPaper00053657:N2_M.humicola-infection_24hr
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053771:up_at_3h-NaCl
WBPaper00053771:up_at_24h-NaCl
WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054810:deoxynivalenol_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055137:S.maltophilia_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_L4
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay1
WBPaper00056826:SGP_biased
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057001:Maternal_DietaryRestriction_downregulated
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058725:sftb-1(cer39)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059231:alh-6(lax105)_L4_downregulated
WBPaper00059253:sucrose_downregulated
WBPaper00059253:sucrose_stearic-acid_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059373:stt-3(RNAi)_upregulated
WBPaper00059378:cec-4(ok3124);lmn-1(WT)_vs_lmn-1(WT)_upregulated
WBPaper00059378:lmn-1(Y59C)_upregulated
WBPaper00059440:LAG-1_interacting_germline
WBPaper00059527:lsm-1_downregulated_L1
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00059839:S.maltophilia_regulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060084:cco-1(RNAi)_upregulated_N2
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060224:atf-6(ok551)_upregulated
WBPaper00060273:isp-1(qm150)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:CoCl2_6hr_upregulated_N2
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061007:HB101_upregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061040:FW1256_downregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:C10C5.2-Y58A7A.3
WBPaper00061692:acivicin_upregulated
WBPaper00061823:mex-3(spr9)_downregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062078:NMR-HspB1_regulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062456:doxycycline_upregulated_CB4856_protein
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062456:doxycycline_upregulated_N2_protein
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062590:Aging_upregulated_body-wall-muscle
WBPaper00062590:Aging_upregulated_neuron
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064762:freezing-thaw_regulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
WBPaper00065272:dhgd-1(tm6671)_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065841:13_0
WBPaper00065841:26_0
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00025141:N2_Expressed_Genes
WBPaper00027111:rde-3(r459)_upregulated
WBPaper00028789:PA14_vs_gacA_upregulated_4hr
WBPaper00028789:PA14_vs_gacA_upregulated_8hr
WBPaper00028789:PA14_vs_OP50_upregulated_4hr
WBPaper00028789:PA14_vs_OP50_upregulated_8hr
WBPaper00029437:dcr-1_upregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031060:2-deoxy-D-glucose_upregulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:FedUp
WBPaper00033101:spr-5_regulated
WBPaper00034757:up_by_oxidative_stress
WBPaper00035227:bio-electrospray_regulated
WBPaper00035227:heat_shock_regulated
WBPaper00035429:UVC_upregulated
WBPaper00035873:osmotically_regulated
WBPaper00035891:PA_induced_zip-2_dependent
WBPaper00035891:zip-2(RNAi)_downregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_D
WBPaper00036383:ash-2_L3_regulated
WBPaper00037695:WC_5-day
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00038304:octr-1_regulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:Q100_up
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HF_11d_0.2mM_Down
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041876:daf-10(m79)_downreglated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042128:gei-8(ok1671)_upregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00042574:JU1580_OrsayVirus_upregulated
WBPaper00044013:nasp-1_downregulated
WBPaper00044535:male_upregulated
WBPaper00045015:acs-3(ft5)_upregulated
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00045673:colistin_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00050515:nipi-3(fr4)_upregulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
WBPaper00051448:P.aeruginosa_Liquid-Killing_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00055899:nitroguanidine_regulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Map_infoPositivePositive_cloneY58A7AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV-2.86641
ReferenceWBPaper00035429
WBPaper00059378
MethodGene