WormBase Tree Display for Gene: WBGene00019279

WBGene00019279 SMap: S_parent: Sequence: K01A2
  Identity: Version: 1
    Name: Sequence_name: K01A2.4
      Molecular_name: K01A2.4a
        K01A2.4a.1
        CE39022
        K01A2.4b
        CE50827
        K01A2.4a.2
        K01A2.4b.1
      Other_name: CELE_K01A2.4 Accession_evidence: NDB BX284602
      Public_name: K01A2.4
    DB_info: Database: AceView gene 2A599
        WormFlux gene WBGene00019279
        NDB locus_tag CELE_K01A2.4
        NCBI gene 3565272
        RefSeq protein NM_001381311.1
            NM_001381310.1
        TrEMBL UniProtAcc A0A0K3ARM0
            Q7KNR1
        UniProt_GCRP UniProtAcc Q7KNR1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01715493
      WBVar01499702
      WBVar00250995
      WBVar01704985
      WBVar01704986
      WBVar01704987
      WBVar01704988
      WBVar01492718
      WBVar01704989
      WBVar00092839
      WBVar02122083
      WBVar01704990
      WBVar00301673
      WBVar00309693
      WBVar02039853
      WBVar02039854
      WBVar01850684
      WBVar00253794
      WBVar01500106
      WBVar01574578
      WBVar01412428
      WBVar01357611
      WBVar01399476
      WBVar00354565
      WBVar01399478
      WBVar00354566
      WBVar00698028
      WBVar00698029
      WBVar00354567
      WBVar00354568
      WBVar00698030
      WBVar00698031
      WBVar00354569
      WBVar00698032
      WBVar00354570
      WBVar01237084
      WBVar00354571
      WBVar00698033
      WBVar00698034
      WBVar00354572
      WBVar00698035
      WBVar00354573
      WBVar00698036
      WBVar00354574
      WBVar00698037
      WBVar00354575
      WBVar00354576
      WBVar00698038
      WBVar00698039
      WBVar01237095
      WBVar00354577
      WBVar00354578
      WBVar00698040
      WBVar00354579
      WBVar00698041
      WBVar00354580
      WBVar00698042
      WBVar00698043
      WBVar00698044
      WBVar00698045
      WBVar00698046
      WBVar00698047
      WBVar00354585
      WBVar00698048
      WBVar02006448
      WBVar00698049
      WBVar02006449
      WBVar00698050
      WBVar02006450
      WBVar02006451
      WBVar00698051
      WBVar00698052
      WBVar00698053
      WBVar00698054
      WBVar00698055
      WBVar00698056
      WBVar02098968
      WBVar00698057
      WBVar00698058
      WBVar01655230
      WBVar00698059
      WBVar00698060
      WBVar00698061
      WBVar00305069
      WBVar00263421
      WBVar00698062
      WBVar00263422
      WBVar00698063
      WBVar02122349
      WBVar00698064
      WBVar00698065
      WBVar00698066
      WBVar00698067
      WBVar00698068
      WBVar00698069
      WBVar00262509
      WBVar01932843
      WBVar01476804
      WBVar00543545
      WBVar01532499
      WBVar01532500
      WBVar01532501
      WBVar02121836
      WBVar01846544
      WBVar02101784
      WBVar01681870
      WBVar01681871
      WBVar01681872
      WBVar01435285
      WBVar01681873
      WBVar01681874
      WBVar01435286
      WBVar01801432
      WBVar01681875
      WBVar01435287
      WBVar01435288
      WBVar01681876
      WBVar01681877
      WBVar01681878
      WBVar01681879
      WBVar00162917
      WBVar01681880
      WBVar00162918
      WBVar01681881
      WBVar01681882
      WBVar01681883
      WBVar01641505
      WBVar01681884
      WBVar01291304
      WBVar01291305
      WBVar01681885
      WBVar01291307
      WBVar01681886
      WBVar01291308
      WBVar02014225
      WBVar01681887
      WBVar01681888
      WBVar01291309
      WBVar01681889
      WBVar01623035
      WBVar01291310
      WBVar02122426
      WBVar01623036
      WBVar01681890
      WBVar01291311
      WBVar01681891
      WBVar01681892
      WBVar01681893
      WBVar01681894
      WBVar01681895
      WBVar01681896
      WBVar01681897
      WBVar01681898
    RNASeq_FPKM (74)
    GO_annotation: 00000831
    Ortholog: WBGene00064702 Caenorhabditis remanei From_analysis: TreeFam
      CSP26.g5613 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18316 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17509 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g880 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g24381 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      chrII_pilon.g3086 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00019278
      WBGene00019282 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00019283 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00086561 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K01A2.4a
      K01A2.4b
    Corresponding_CDS_history: K01A2.4:wp147
    Corresponding_transcript: K01A2.4a.1
      K01A2.4a.2
      K01A2.4b.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00049588 Inferred_automatically: RNAi_primary
      WBRNAi00033805 Inferred_automatically: RNAi_primary
      WBRNAi00016369 Inferred_automatically: RNAi_primary
      WBRNAi00016370 Inferred_automatically: RNAi_primary
      WBRNAi00016374 Inferred_automatically: RNAi_primary
    Expr_pattern (4)
    Drives_construct: WBCnstr00025949
    Construct_product: WBCnstr00025949
    Microarray_results (25)
    Expression_cluster: WBPaper00036738:500uM_Heme_downregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044246:pgrn-1_ced-1_downregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048988:neuron_expressed
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049732:blmp-1(tm548);daf-7(e1372ts)_vs_daf-7(e1372ts)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059253:sucrose_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059537:ngn-1(ok2200)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060764:swsn-9(ok1354)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00060921:cat-2(e1112)_downregulated
      WBPaper00061007:M.braciatum_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061106:endu-2(tm4977)_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:DB
      WBPaper00061340:DD
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061340:hmc_and_homolog
      WBPaper00061340:I5
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:PVR
      WBPaper00061340:P_cell
      WBPaper00061340:RIC_parent
      WBPaper00061340:RID
      WBPaper00061340:RID_parent
      WBPaper00061340:RMED
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062156:jmjd-1.2(zr1010)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062440:crh-1(syb385)_downregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064494:postdauer_upregulated_WholeAnimal
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065158:25C_vs_15C_upregulated_AFD
      WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065823:pmk-1(km25)_upregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065841:1_0
      WBPaper00065841:1_2
      WBPaper00065841:4_0
      WBPaper00065841:7_0
      WBPaper00065841:23_0
      WBPaper00065841:38_0
      WBPaper00065841:38_2
      WBPaper00065841:38_3
      WBPaper00065841:51_0
      WBPaper00065841:51_1
      WBPaper00065841:110_0
      WBPaper00065841:110_1
      WBPaper00065877:rege-1(imm070)_upregulated_OP50
      WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00065945:global-rpoa-2(-)_downregulated_transcript
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066204:CdCl2_downregulated_mRNA
      cgc4489_group_7
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
      WBPaper00025032:cluster_44
      WBPaper00025032:cluster_129
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00031003:hlh_1_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031703:heme_responsive_8
      WBPaper00032948:StarveUp2
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035227:heat_shock_regulated
      WBPaper00037147:heatshock_upregulated
      WBPaper00037695:CC_3-day
      WBPaper00038060:SUMO-1_downregulated
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040821:Au-NP_regulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041876:daf-10(m79)_downreglated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042067:Cu2+_upregulated_WT
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045865:biofilm_downregulated_B
      WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
      WBPaper00046083:pmk-1(km25)_OP50_upregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00046639:tyrosol_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00057098:SiO2-nanoparticles_upregulated
  Map_info: Positive: Positive_clone: K01A2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -15.6297
  Method: Gene